BAC Information

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BAC

Clone NameB6Ng01-336M09
Chromosome17 (Build37)
Map Location 92,941,072 - 93,039,024
singlet/doubletdoublet
Overlap geneLOC676141
Upstream geneLOC100043741, LOC100043742, EG640442, LOC627395
Downstream geneLOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M09.bB6Ng01-336M09.g
ACCGA121595GA121596
length1,049444
definitionB6Ng01-336M09.b B6Ng01-336M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,038,471 - 93,039,024)(92,941,072 - 92,941,520)
sequence
gaattcacaactacacttgtctaataaaggcaaaaataagatatttatta
catttcaggaacaacatgtaaggggttaccagtcttttacacaatgagtt
ttagatttgaaagatacactgttgtaatgaaagaagaaatgttaaaaaat
accccaagttctggaaatgtacttcacagtttaatattcaaatttaaaac
aaaacctggctgacttggagctctgtgaatctgagaatatttgctgagaa
attatttattgtttattattaattattaattctcattgttgttctgtatt
tcagaatatctttttgtctttcactggtgactaattaaaaagaacattag
caacagcattttcttttttaaaattagatattttaaaattagatattttc
ctcatttacattttaattgctatcccgaaatttcccaatactcttcccct
actgtgcttcctagtccacccattcctgcttcctgacattcctctgcact
ggggcatataatgttcttaagaccaagggaccttccacccagtgatggcc
tactaggccatcctctgctacatatgcaactagagacacacctctgggag
ggactggttagttcatattgttattcctcctatagtgttgtagacacctt
tagctccttggttactttctctagccccttcattgggggctctgtgttcc
atccaatagatgactctgagcatccacttaagtattttccaggcctggca
tagcctcacaagagacagctatatcagggtcctgtcagcaaaatcttgct
ggcatatgcaatagtgtctgggtttggtggttgtttatgggatggatccc
caggtggagcagtctctggatggtccttccttctgtctgagctccaaact
ttgtctctataactcctttcatgggtattttgtctccattctaaaaggaa
cggatagctgcactttgttcttccttcttcatgagttttatatgttttgc
aaatttttatttgggatctaagtttctgggctatatccacttatcagta

ataaagtgagagcagtgactatggatttctttctcctaaatggaagcctt
atctgacatcaatataaaaagatacacctagtcttactgcaacttgataa
tgcaaagctggttaactattatggaagacctccccgttttctgagttaaa
ggggaagagaggtagatggggggtttatgagaggttgggactaggaagag
aggaaggaggacaagctatgattaaaatataaagcatatatatataactt
agtcaatggcaaaataaaaaatgcccagacaatacattatgagatcaaaa
tactaataaaaaaattaacaaattcccccaacctatctccggaaataacc
tttaactcattgctatagtaaacaaattcctgacaatccatgactcttgc
attaggctaatcaattttcatatgataccttatggaactatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_93038471_93039024
seq2: B6Ng01-336M09.b_48_601 (reverse)

seq1  AGTAGGCCATCACTGGGTGGAAGGTCCCTTGGTCTTAAGAACATTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCCATCACTGGGTGGAAGGTCCCTTGGTCTTAAGAACATTATATG  50

seq1  CCCCAGTGCAGAGGAATGTCAGGAAGCAGGAATGGGTGGACTAGGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGCAGAGGAATGTCAGGAAGCAGGAATGGGTGGACTAGGAAGCA  100

seq1  CAGTAGGGGAAGAGTATTGGGAAATTTCGGGATAGCAATTAAAATGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGGAAGAGTATTGGGAAATTTCGGGATAGCAATTAAAATGTAAA  150

seq1  TGAGGAAAATATCTAATTTTAAAATATCTAATTTTAAAAAAGAAAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAATATCTAATTTTAAAATATCTAATTTTAAAAAAGAAAATGCT  200

seq1  GTTGCTAATGTTCTTTTTAATTAGTCACCAGTGAAAGACAAAAAGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAATGTTCTTTTTAATTAGTCACCAGTGAAAGACAAAAAGATATT  250

seq1  CTGAAATACAGAACAACAATGAGAATTAATAATTAATAATAAACAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATACAGAACAACAATGAGAATTAATAATTAATAATAAACAATAAA  300

seq1  TAATTTCTCAGCAAATATTCTCAGATTCACAGAGCTCCAAGTCAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCAGCAAATATTCTCAGATTCACAGAGCTCCAAGTCAGCCAGG  350

seq1  TTTTGTTTTAAATTTGAATATTAAACTGTGAAGTACATTTCCAGAACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAAATTTGAATATTAAACTGTGAAGTACATTTCCAGAACTTG  400

seq1  GGGTATTTTTTAACATTTCTTCTTTCATTACAACAGTGTATCTTTCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTTTTAACATTTCTTCTTTCATTACAACAGTGTATCTTTCAAAT  450

seq1  CTAAAACTCATTGTGTAAAAGACTGGTAACCCCTTACATGTTGTTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTCATTGTGTAAAAGACTGGTAACCCCTTACATGTTGTTCCTGA  500

seq1  AATGTAATAAATATCTTATTTTTGCCTTTATTAGACAAGTGTAGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATAAATATCTTATTTTTGCCTTTATTAGACAAGTGTAGTTGTGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


seq1: chr17_92941072_92941520
seq2: B6Ng01-336M09.g_66_515

seq1  GAATTCATAAAGTGAGAGCAGTGACTATGGATTTCTTTCTCCTAAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAGTGAGAGCAGTGACTATGGATTTCTTTCTCCTAAATGGA  50

seq1  AGCCTTATCTGACATCAATATAAAAAGATACACCTAGTCTTACTGCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATCTGACATCAATATAAAAAGATACACCTAGTCTTACTGCAACT  100

seq1  TGATAATGCAAAGCTGGTTAACTATTATGGAAGACCTCCCCGTTTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGCAAAGCTGGTTAACTATTATGGAAGACCTCCCCGTTTTCTGA  150

seq1  GTTAAAGGGGAAGAGAGGTAGATGGGGGGTTTATGAGAGGTTGGGACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGGGAAGAGAGGTAGATGGGGGGTTTATGAGAGGTTGGGACTAG  200

seq1  GAAGAGAGGAAGGAGGACAAGCTATGATTAGAATATAAAGTATATATATA  250
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GAAGAGAGGAAGGAGGACAAGCTATGATTAAAATATAAAGCATATATATA  250

seq1  TAACTTAGTCAATGGTAAAATAAAAAATGCCCAGACAATACATTATGAGA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAACTTAGTCAATGGCAAAATAAAAAATGCCCAGACAATACATTATGAGA  300

seq1  TCAAAATACTAATAAAAAAATTAACAAATT-TCAGAACAAATAGTAGGAA  349
      ||||||||||||||||||||||||||||||  |  |||  ||    ||||
seq2  TCAAAATACTAATAAAAAAATTAACAAATTCCCCCAACCTATCTCCGGAA  350

seq1  ATAACCTTGAACTCATTGGTATAGTAAACAAATTCCTGACAATCAATGAC  399
      |||||||| ||||||||| ||||||||||||||||||||||||| |||||
seq2  ATAACCTTTAACTCATTGCTATAGTAAACAAATTCCTGACAATCCATGAC  400

seq1  TCAGGCACTAGGGTAAACAATTATTATATGAAACCTTATGGAACTATTTT  449
      ||  ||| |||| ||| ||||| | |||||| ||||||||||||||||||
seq2  TCTTGCATTAGGCTAATCAATTTTCATATGATACCTTATGGAACTATTTT  450


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