BAC Information

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BAC

Clone NameB6Ng01-336P20
Chromosome17 (Build37)
Map Location 20,626,122 - 20,717,537
singlet/doubletdoublet
Overlap geneV1re5, EG627814, EG381065, EG224582
Upstream geneEG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805
Downstream geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336P20.bB6Ng01-336P20.g
ACCGA121751GA121752
length1,1741,045
definitionB6Ng01-336P20.b B6Ng01-336P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,716,507 - 20,717,537)(20,626,122 - 20,627,160)
sequence
gaattcattgcataacattaaaattctatgttattatttgtcataaggcc
ataaaatttagatacgtttcctttcattgtcctcagatccctcagtctgt
gtgcagtgagagttgtaggcctggattcagaaaagtaatcctggagggca
aggccatctgctgctacaattgcactccttgtgcagacaatgagatttct
aatgagacaggtaaatgcaggttttacagaaatctttcctatttttccac
aggattccataataaactagcaaatgaaaatggtctgaattaaaatcaga
aataaatattgttattttttttcaggaatttacttgtcataattctccat
catttatttgtaatggactatcttagtcattaaaaatcatacttgattta
tatctgtgattcactgccaatattgattgtgggaaaaaataaatattttc
agtatactccacagtatgtttcacctgatggtaccatttatccaatattg
ataaattttcagtatagtattttcacctatgtttcaataaatttaatact
cagatcatttacatcttcatagtagtgattaactccaactcattttcaaa
atatattttctctcaattttagttgtttaataattttgtacaatgtgttt
tgtacaattttgtacaatgtgttttgatcatattcagtccttgttttaat
aaggattttactgctgtgaacaaacactgtgaccatagcaatttttcaaa
gagacaacatttaattttggctagcttagaggttcagtccattatcatca
agatgtgagcatgcagcatccatgcaaacatggtgtaggaggagctgaga
gttctacatcttattctgaaatcaaacaggagaagactgccttccagaca
gctaggaccaggttcttaaacatatgctcatagtgacaaacccactccaa
ggccacacttcctaatactaccactccctgggcctagcatatacattcca
ttccattccagttccccataggcttcttcaaatgcatactctacaggggc
catatctagccttagcataatttaaaagtacattaatcaaatcgaaggct
catatctacatcagttctcacatgtcaaagccaagtcagtctttcctttg
gaattcatctgattcttaactgca
gaattcttccttgcccatttttactggagtttcagaattttcttctaatt
ttgttagcaggcctatataaagtccacagaaaacacagtaagtttatttc
tcaatttggacaatctgatggtgcccctgaattactcacttctaaatgac
atatgtaatttcagggcaaaaattaaatatgctgttcatattttgagctt
tgggcttctgttttaatatagtccatcttcacctttggtaattttcagaa
taaaaggctcagccattcttttatctagtgaacaaggttcaaagacaatt
tattagttccttagaacatgagtaagttttttaaaaatcctttttccatc
attgataataccagaaaaactagaagaaaaattattctaatatacatgcc
cttccgtgttaccatgtaattctccacttacacacatgtttaaataccaa
ggtcagtctatattaaagaactttgttttaatattagtcagaaaggttct
tactctccagacttagggcaatgtctatggacaaagctgcctgcttgaat
tgattgttaactttgttctttaactctgaatagttatgggcagcgattta
ctgaacagcagatttccctgtggctttccattctgagttataaacactca
ttccatgtagtcaattgaagataaagaaaaactccaagaagttgtttcac
atatttacatttccactgtaatgtttcatatccttgctatagtcagcttt
tgttaatctactctttcatccttttagtttttcagtttgttaattggctt
tggcatccatccatttctacagtacagtggcacaatattttacagctcaa
actatcttatgtggactaagaaataaccttgccagtcatagcttgaatca
atatattgtgcaataagattcattaagatgatttttttttgctattatct
gtgaggaaaagagagtgaatcaatgaaaggtttaaaaatccagtacaggg
gaacgccaggggccaaaaagggggagtggggttggggttagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20716507_20717537
seq2: B6Ng01-336P20.b_204_1220 (reverse)

seq1  TGCAGTTAAGGGATCAGATGAATCTCAGAGG--AGACTGAACTTTGGGCT  48
      ||||||||| | |||||||||||  || |||  |||||| ||||  ||| 
seq2  TGCAGTTAA-GAATCAGATGAATTCCAAAGGAAAGACTG-ACTT--GGC-  45

seq1  TTTGACATTGTTGAG-ACTGATGTAGAATATGAGGCCTTTGGAATTTGGA  97
      ||||||||   |||| |||||||||| |||||| ||||| |  |||| ||
seq2  TTTGACAT--GTGAGAACTGATGTAG-ATATGA-GCCTTCG--ATTT-GA  88

seq1  TTAAATGTACTTTTTAAATTATGCTAAGGCTAGATATGGCCCCTGTAGAG  147
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TT-AATGTAC-TTTTAAATTATGCTAAGGCTAGATATGGCCCCTGTAGAG  136

seq1  TAATGCATTTGAAGAAGCCTATGGGGAACTTGGAATGGAATGGAATTGTA  197
      | ||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  T-ATGCATTTGAAGAAGCCTATGGGGAAC-TGGAATGGAATGGAA-TGTA  183

seq1  TATGCTAGGCCCAGGGAGTGGTAGTATTAGGAAGTGTGGCCTTGGAGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGGCCCAGGGAGTGGTAGTATTAGGAAGTGTGGCCTTGGAGTGG  233

seq1  GTTTGTCACTATGAGCATATGTTTAAGAACCTGGTCCTAGCTGTCTGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCACTATGAGCATATGTTTAAGAACCTGGTCCTAGCTGTCTGGAA  283

seq1  GGCAGTCTTCTCCTGTTTGATTTCAGAATAAGATGTAGAACTCTCAGCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTTCTCCTGTTTGATTTCAGAATAAGATGTAGAACTCTCAGCTC  333

seq1  CTCCTACACCATGTTTGCATGGATGCTGCATGCTCACATCTTGATGATAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACACCATGTTTGCATGGATGCTGCATGCTCACATCTTGATGATAA  383

seq1  TGGACTGAACCTCTAAGCTAGCCAAAATTAAATGTTGTCTCTTTGAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGAACCTCTAAGCTAGCCAAAATTAAATGTTGTCTCTTTGAAAAA  433

seq1  TTGCTATGGTCACAGTGTTTGTTCACAGCAGTAAAATCCTTATTAAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGGTCACAGTGTTTGTTCACAGCAGTAAAATCCTTATTAAAACA  483

seq1  AGGACTGAATATGATCAAAACACATTGTACAAAATTGTACAAAACACATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAATATGATCAAAACACATTGTACAAAATTGTACAAAACACATT  533

seq1  GTACAAAATTATTAAACAACTAAAATTGAGAGAAAATATATTTTGAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAATTATTAAACAACTAAAATTGAGAGAAAATATATTTTGAAAAT  583

seq1  GAGTTGGAGTTAATCACTACTATGAAGATGTAAATGATCTGAGTATTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGTTAATCACTACTATGAAGATGTAAATGATCTGAGTATTAAA  633

seq1  TTTATTGAAACATAGGTGAAAATACTATACTGAAAATTTATCAATATTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAACATAGGTGAAAATACTATACTGAAAATTTATCAATATTGG  683

seq1  ATAAATGGTACCATCAGGTGAAACATACTGTGGAGTATACTGAAAATATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGTACCATCAGGTGAAACATACTGTGGAGTATACTGAAAATATT  733

seq1  TATTTTTTCCCACAATCAATATTGGCAGTGAATCACAGATATAAATCAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCCCACAATCAATATTGGCAGTGAATCACAGATATAAATCAAG  783

seq1  TATGATTTTTAATGACTAAGATAGTCCATTACAAATAAATGATGGAGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTTAATGACTAAGATAGTCCATTACAAATAAATGATGGAGAAT  833

seq1  TATGACAAGTAAATTCCTGAAAAAAAATAACAATATTTATTTCTGATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAAGTAAATTCCTGAAAAAAAATAACAATATTTATTTCTGATTTT  883

seq1  AATTCAGACCATTTTCATTTGCTAGTTTATTATGGAATCCTGTGGAAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACCATTTTCATTTGCTAGTTTATTATGGAATCCTGTGGAAAAA  933

seq1  TAGGAAAGATTTCTGTAAAACCTGCATTTACCTGTCTCATTAGAAATCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGATTTCTGTAAAACCTGCATTTACCTGTCTCATTAGAAATCTC  983

seq1  ATTGTCTGCACAAGGAGTGCAATTGTAGCAGCAG  1031
      ||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGCACAAGGAGTGCAATTGTAGCAGCAG  1017

seq1: chr17_20626122_20627160
seq2: B6Ng01-336P20.g_66_1110

seq1  GAATTCTTCCTTGCCCATTTTTACTGGAGTTTCAGAATTTTCTTCTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTGCCCATTTTTACTGGAGTTTCAGAATTTTCTTCTAATT  50

seq1  TTGTTAGCAGGCCTATATAAAGTCCACAGAAAACACAGTAAGTTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGCAGGCCTATATAAAGTCCACAGAAAACACAGTAAGTTTATTTC  100

seq1  TCAATTTGGACAATCTGATGGTGCCCCTGAATTACTCACTTCTAAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGGACAATCTGATGGTGCCCCTGAATTACTCACTTCTAAATGAC  150

seq1  ATATGTAATTTCAGGGCAAAAATTAAATATGCTGTTCATATTTTGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAATTTCAGGGCAAAAATTAAATATGCTGTTCATATTTTGAGCTT  200

seq1  TGGGCTTCTGTTTTAATATAGTCCATCTTCACCTTTGGTAATTTTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCTGTTTTAATATAGTCCATCTTCACCTTTGGTAATTTTCAGAA  250

seq1  TAAAAGGCTCAGCCATTCTTTTATCTAGTGAACAAGGTTCAAAGACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTCAGCCATTCTTTTATCTAGTGAACAAGGTTCAAAGACAATT  300

seq1  TATTAGTTCCTTAGAACATGAGTAAGTTTTTTAAAAATCCTTTTTCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTCCTTAGAACATGAGTAAGTTTTTTAAAAATCCTTTTTCCATC  350

seq1  ATTGATAATACCAGAAAAACTAGAAGAAAAATTATTCTAATATACATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATACCAGAAAAACTAGAAGAAAAATTATTCTAATATACATGCC  400

seq1  CTTCCGTGTTACCATGTAATTCTCCACTTACACACATGTTTAAATACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTGTTACCATGTAATTCTCCACTTACACACATGTTTAAATACCAA  450

seq1  GGTCAGTCTATATTAAAGAACTTTGTTTTAATATTAGTCAGAAAGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCTATATTAAAGAACTTTGTTTTAATATTAGTCAGAAAGGTTCT  500

seq1  TACTCTCCAGACTTAGGGCAATGTCTATGGACAAAGCTGCCTGCTTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCAGACTTAGGGCAATGTCTATGGACAAAGCTGCCTGCTTGAAT  550

seq1  TGATTGTTAACTTTGTTCTTTAACTCTGAATAGTTATGGGCAGCGATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGTTAACTTTGTTCTTTAACTCTGAATAGTTATGGGCAGCGATTTA  600

seq1  CTGAACAGCAGATTTCCCTGTGGCTTTCCATTCTGAGTTATAAACACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGCAGATTTCCCTGTGGCTTTCCATTCTGAGTTATAAACACTCA  650

seq1  TTCCATGTAGTCAATTGAAGATAAAGAAAAACTCCAAGAAGTTGTTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTAGTCAATTGAAGATAAAGAAAAACTCCAAGAAGTTGTTTCAC  700

seq1  ATATTTACATTTCCACTGTAATGTTTCATATCCTTGCTATAGTCAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACATTTCCACTGTAATGTTTCATATCCTTGCTATAGTCAGCTTT  750

seq1  TGTTAATCTACTCTTTCATCCTTTTAGTTTTTCAGTTTGTTAATTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATCTACTCTTTCATCCTTTTAGTTTTTCAGTTTGTTAATTGGCTT  800

seq1  TGGCATCCATCCATTTCTACAGTACAGTGGCACAATATTTTACAGCTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCATCCATTTCTACAGTACAGTGGCACAATATTTTACAGCTCAA  850

seq1  ACTATCTTATGTGGACTAAGAAATAACCTTGCCAGTCATAGCTTGAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTATGTGGACTAAGAAATAACCTTGCCAGTCATAGCTTGAATCA  900

seq1  ATATATTGTGCAATAAGATTCATTAAGATGA-TTTTTTTTGCTATTATCT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATATTGTGCAATAAGATTCATTAAGATGATTTTTTTTTGCTATTATCT  950

seq1  GTGAGGAAAAGAGAGTGAATCAATGAAAGGTTTAAAAATCCAGTACAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAAAAGAGAGTGAATCAATGAAAGGTTTAAAAATCCAGTACAGGG  1000

seq1  GAACGCCA-GGGCCAAAAAGGGGGAGTGGG--TGGG--TAGGGGA  1039
      |||||||| |||||||||||||||||||||  ||||  |||||||
seq2  GAACGCCAGGGGCCAAAAAGGGGGAGTGGGGTTGGGGTTAGGGGA  1045