BAC Information

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BAC

Clone NameB6Ng01-338G05
Chromosome17 (Build37)
Map Location 32,595,614 - 32,756,701
singlet/doubletdoublet
Overlap gene4732474A20Rik, EG208285, Cyp4f16, LOC667178
Upstream genePde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2
Downstream geneLOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338G05.bB6Ng01-338G05.g
ACCGA122709GA122710
length1,206474
definitionB6Ng01-338G05.b B6Ng01-338G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,755,504 - 32,756,701)(32,595,614 - 32,596,093)
sequence
gaattcttggtagaggaagtagagcctccccattggttccttttctccct
gtgccactttctatttctgaggtggtagtctgtgagtctgagtgtttgga
ttttttttctgatttcaacgacaacatgaatacttcatgcatgtttgttt
atctgctgtgttccttgtggtatttggtttctatatctattagactttaa
cagatggtatggaacaaactgattctcactctctcaatattgtttttagc
tcattttaagaaatcagggccagagttcacaacctcttggtagatgtgaa
gaaggggaaaatgaccacctactacaacagctcagagtggctgacatttg
atgttgcctggctacaagaggggatttttccttctctccattgtgttagc
agtagaagacaaggtgtttcaaaaggctgatcaagtctgctatatagtag
tttggaaggatttggttaccaatccaccacaatgttttaagtctttcttc
ttttccactgctaaaattttctcatcaacagaatggtgtcagccctgatg
gtgggggaatggaaacaagaagttcccatatcgactgccccttcttcatc
ctatcatacaggatagcacccctggggatattgtctgccccacttggcac
catcagcatttcccccactgtaggcctccagctccagtggtgtcaacttc
aggaatagaaggggggcctgcacagggaacatgaagcaagcatatggtgc
ctcctgaggctgcatagccagaggcagaacccactattttacccctaagg
acagcaggaccagtctatcaacaagagaatcaacctcactattattggcc
cattgctacaggtgatctttatagttggaagagggaaaatgcccaattct
ctgacaactctagggagctcattggtctcgtagacagtatcctgttcact
catcagcccacatggcatgattgtcagcagctttcatcgatttctttttc
accatggaggaaaaggaacacatcattttagaggctccaaaagaatgtgg
gagaacatggccatttcagcccaagaacccagctgtgatatgacaatgga
attcccctcaggagaccaggcctgggacttacatacaagtgagggtaaag
gagcatctgggagtcataggcagaatcttgtgtggcaggtctctggcagc
cactag
aggttgttaggcttgtcagcgagcacctttacctgtgagtcatcttgctg
gccctcaaaactttttgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtactcgagaatgtacttgcatgcacacatgtgcaactgaacatgtg
aattcatttgtagatgtgcacgtggaggccagaggaggaacccactctgc
aatttactctgttgaaataaagtctcccatcaaacctggagctcattgct
gttgtgttagactgaccagcaacaagcatggttatcctcatgtcttactg
ccctgcccccaaacagcattgagcttccaagtttatgctgccatgtcagc
tttctctgattctatgtgggtgatagaaatctgaactcagtcctcatgtt
tgcatagcaaatgcttttacccagggagctgttctctctctctctctctc
tctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32755504_32756701
seq2: B6Ng01-338G05.b_47_1252 (reverse)

seq1  CTAGTGGCTGCCAAGAGACCTGC--CACCAGAGTCTTGCCATAGACTCCA  48
      |||||||||||| ||||||||||  ||| ||| || ||||   |||||| 
seq2  CTAGTGGCTGCC-AGAGACCTGCCACACAAGATTC-TGCCTATGACTCCC  48

seq1  AGATGCTCC-TTACCTTCACTTGTATTGTAGTTCCA-GCCTGGTCTCTTG  96
      ||||||||| ||||| ||||||||||   ||| ||| |||||||||| ||
seq2  AGATGCTCCTTTACCCTCACTTGTATGTAAGTCCCAGGCCTGGTCTCCTG  98

seq1  AGGGGAAATCCATTGTCA-ATATCAGCTGGGTTC-TGGGCTGGAAT-GCC  143
      ||||||| |||||||||| ||  ||||||||||| ||||||| ||| |||
seq2  AGGGGAATTCCATTGTCATATCACAGCTGGGTTCTTGGGCTGAAATGGCC  148

seq1  ATTGTCTCCCACATTCTTTT-GAGCCTCTAAAATGATGTGTTCCTTTTCC  192
      ||  |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTTCTCCCACATTCTTTTGGAGCCTCTAAAATGATGTGTTCCTTTTCC  198

seq1  TCCATGGTGAAAA--GAATCGATGAAAGCTGCTGACAATCATGCCATGTG  240
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TCCATGGTGAAAAAGAAATCGATGAAAGCTGCTGACAATCATGCCATGTG  248

seq1  GGCTGATGAGTGAACAGGATACTGTCTACGAGACCAATGAGCTCCCTAGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGAGTGAACAGGATACTGTCTACGAGACCAATGAGCTCCCTAGA  298

seq1  GTTGTCAGAGAATTGGGCATTTTCCCTCTTCCAACTATAAAGATCACCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGAGAATTGGGCATTTTCCCTCTTCCAACTATAAAGATCACCTG  348

seq1  TAGCAATGGGCCAATAATAGTGAGGTTGATTCTCTTGTTGATAGACTGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGGGCCAATAATAGTGAGGTTGATTCTCTTGTTGATAGACTGGT  398

seq1  CCTGCTGTCCTTAGGGGTAAAATAGTGGGTTCTGCCTCTGGCTATGCAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCCTTAGGGGTAAAATAGTGGGTTCTGCCTCTGGCTATGCAGC  448

seq1  CTCAGGAGGCACCATATGCTTGCTTCATGTTCCCTGTGCAGGCCCCCCTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCACCATATGCTTGCTTCATGTTCCCTGTGCAGGCCCCCCTT  498

seq1  CTATTCCTGAAGTTGACACCACTGGAGCTGGAGGCCTACAGTGGGGGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTGAAGTTGACACCACTGGAGCTGGAGGCCTACAGTGGGGGAAA  548

seq1  TGCTGATGGTGCCAAGTGGGGCAGACAATATCCCCAGGGGTGCTATCCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGGTGCCAAGTGGGGCAGACAATATCCCCAGGGGTGCTATCCTG  598

seq1  TATGATAGGATGAAGAAGGGGCAGTCGATATGGGAACTTCTTGTTTCCAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGGATGAAGAAGGGGCAGTCGATATGGGAACTTCTTGTTTCCAT  648

seq1  TCCCCCACCATCAGGGCTGACACCATTCTGTTGATGAGAAAATTTTAGCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCATCAGGGCTGACACCATTCTGTTGATGAGAAAATTTTAGCA  698

seq1  GTGGAAAAGAAGAAAGACTTAAAACATTGTGGTGGATTGGTAACCAAATC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAGAAGAAAGACTTAAAACATTGTGGTGGATTGGTAACCAAATC  748

seq1  CTTCCAAACTACTATATAGCAGACTTGATCAGCCTTTTGAAACACCTTGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAACTACTATATAGCAGACTTGATCAGCCTTTTGAAACACCTTGT  798

seq1  CTTCTACTGCTAACACAATGGAGAGAAGGAAAAATCCCCTCTTGTAGCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTGCTAACACAATGGAGAGAAGGAAAAATCCCCTCTTGTAGCCA  848

seq1  GGCAACATCAAATGTCAGCCACTCTGAGCTGTTGTAGTAGGTGGTCATTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATCAAATGTCAGCCACTCTGAGCTGTTGTAGTAGGTGGTCATTT  898

seq1  TCCCCTTCTTCACATCTACCAAGAGGTTGTGAACTCTGGCCCTGATTTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTTCACATCTACCAAGAGGTTGTGAACTCTGGCCCTGATTTCT  948

seq1  TAAAATGAGCTAAAAACAATATTGAGAGAGTGAGAATCAGTTTGTTCCAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGCTAAAAACAATATTGAGAGAGTGAGAATCAGTTTGTTCCAT  998

seq1  ACCATCTGTTAAAGTCTAATAGATATAGAAACCAAATACCACAAGGAACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTTAAAGTCTAATAGATATAGAAACCAAATACCACAAGGAACA  1048

seq1  CAGCAGATAAACAAACATGCATGAAGTATTCATGTTGTCGTTGAAATCAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATAAACAAACATGCATGAAGTATTCATGTTGTCGTTGAAATCAG  1098

seq1  AAAAAAAATCCAAACACTCAGACTCACAGACTACCACCTCAGAAATAGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCCAAACACTCAGACTCACAGACTACCACCTCAGAAATAGAA  1148

seq1  AGTGGCACAGGGAGAAAAGGAACCAATGGGGAGGCTCTACTTCCTCTACC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACAGGGAGAAAAGGAACCAATGGGGAGGCTCTACTTCCTCTACC  1198

seq1  AAGAATTC  1198
      ||||||||
seq2  AAGAATTC  1206

seq1: chr17_32595614_32596093
seq2: B6Ng01-338G05.g_69_548

seq1  GAATTCAGGTTGTTAGGCTTGTCAGCGAGCACCTTTACCTGTGAGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTTAGGCTTGTCAGCGAGCACCTTTACCTGTGAGTCATC  50

seq1  TTGCTGGCCCTCAAAACTTTTTGTAGTGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCCCTCAAAACTTTTTGTAGTGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGTGTGTGTGTACTCGAGAATGTACTTGCATGCACACATGTGCAACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTACTCGAGAATGTACTTGCATGCACACATGTGCAACTGAA  150

seq1  CATGTGAATTCATTTGTAGATGTGCACGTGGAGGCCAGAGGAGGAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAATTCATTTGTAGATGTGCACGTGGAGGCCAGAGGAGGAACCCA  200

seq1  CTCTGCAATTTACTCTGTTGAAATAAAGTCTCCCATCAAACCTGGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAATTTACTCTGTTGAAATAAAGTCTCCCATCAAACCTGGAGCTC  250

seq1  ATTGCTGTTGTGTTAGACTGACCAGCAACAAGCATGGTTATCCTCATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTGTGTTAGACTGACCAGCAACAAGCATGGTTATCCTCATGTC  300

seq1  TTACTGCCCTGCCCCCAAACAGCATTGAGCTTCCAAGTTTATGCTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCCTGCCCCCAAACAGCATTGAGCTTCCAAGTTTATGCTGCCAT  350

seq1  GTCAGCTTTCTCTGATTCTATGTGGGTGATAGAAATCTGAACTCAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTTCTCTGATTCTATGTGGGTGATAGAAATCTGAACTCAGTCCT  400

seq1  CATGTTTGCATAGCAAATGCTTTTACCCAGGGAGCTGTTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTGCATAGCAAATGCTTTTACCCAGGGAGCTGTTCTCTCTCTCTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  480
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  480