BAC Information

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BAC

Clone NameB6Ng01-338H07
Chromosome1 (Build37)17 (Build37)
Map Location 116,943,879 - 116,944,42154,846,871 - 54,847,327
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H07.bB6Ng01-338H07.g
ACCGA122755GA122756
length1,045924
definitionB6Ng01-338H07.b B6Ng01-338H07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,943,879 - 116,944,421)(54,846,871 - 54,847,327)
sequence
gaattctcaaccctcatcaaaaaagcttccttttcttaccagttgtattt
tttttttattggttacttaatttgtttacatttcaacttttgcctccctt
cctggtctcccctctgcaagtccactatcacttccccactcctcattgcc
tctaagagggtgttccctcacctactcatccattctcacctcatgcctat
agcacccccatatgctgagctgtggtaacagcctacacaaaactgttgat
gccaaatatgtagctggaatcatgtacccatccatgtgtcttggtttgag
tatgcttggtgcagggagtgacaatacttggaggtgtggccttgctggaa
taggtgtatcacagtggacatgaacttaagaccctcaccttagctgcctg
gaagtcagtattctgctatcagccttcagatgaagatatagaattctcag
ctctcctgcaccatgtctgcttagatgctgcattgctcctgccttgatga
ttatggagtgaacatctgaaattgtaagccacacagacttaattactgtt
atttataagacgtgcattggtcatagtgtctgttcacagcagttaaaccc
taaggaagacaaaagtcggtaccagggactggggcatttctgggataggc
tggaccatgcttttgtttggaggattgtagattttgggactttggaaagc
tgtggaatgctttaagttgggcttaatttgcaatcaaagaaggaatatat
aagactttgttgctgagtatgatttgaactgtgcagacatggccaaagtt
tcagtaaagaaaaatttcagaaaggcagcctagagatttcttttcatagt
attttgatgaagaatgtgtctactttttgcccttgtctgaagagactgcc
tgagggtaaggtgaagagactcagattaattgcattgacaaaggtagtct
cagagatgcccaggagagactttgctctctgttaagtctcatgagacatt
ttgacattgtagccagcttagaaagggaaaaaaattaaatatatg

gaattcagtaagaatgttgctattcagtgaaattcagaattgcctctagt
attttaagagagatagtgaaagaaattaggctttactatctactacatag
agttagaaatctcagggcaagcttagcaatgcaagtttaaaattcttatt
gtagttatatatggcagactacattacttattagtagaaaactctcccca
cactatcacttagaataaaagtcaagttgctcccatacacaggaatttac
aatggtttgggaagtagatcaggctgtggtttagagtattgcattattca
tgagaaggttagctagagcgaaattccctaattagaaccatgacttgggc
atgaaagcccttgctctgggagtgtaaagacctcatgcctggcttctaag
actatagctgaccttagatagagctgacattgtctcagttgttttattgc
ccagttcctgccagtctttgtgtttgcatttctctgttttgtttaagagt
ttttaagcatccagtaaccttattgtacattgccaatatgtcacctaact
ttcctattttcttctgtataaaaagtttgatgctcaatttgacattacat
tcagagtcagcacactcccttgtgtctgtctgtttgtcaccccattctag
ctgactctatgcctatctgtctgagaccttgattcccacaaattgagggg
ggccgactaggcccaagacatggcactcttgtgagggatgccagtacttg
gcaaatacagaagtggatcctcccagtcatctatttgatggaacacagga
cccacaatgagggatgtactgcttagaaagcaaatcctggaaaaagggaa
aggacttgctgaggggcaaaaaaaaaaaaaaaaaaaaaatccaggagggg
agggcatcatgagacagaggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116943879_116944421
seq2: B6Ng01-338H07.b_42_584

seq1  GAATTCTCAACCCTCATCAAAAAAGCTTCCTTTTCTTACCAGTTGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACCCTCATCAAAAAAGCTTCCTTTTCTTACCAGTTGTATTT  50

seq1  TTTTTTTATTGGTTACTTAATTTGTTTACATTTCAACTTTTGCCTCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGGTTACTTAATTTGTTTACATTTCAACTTTTGCCTCCCTT  100

seq1  CCTGGTCTCCCCTCTGCAAGTCCACTATCACTTCCCCACTCCTCATTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCCCCTCTGCAAGTCCACTATCACTTCCCCACTCCTCATTGCC  150

seq1  TCTAAGAGGGTGTTCCCTCACCTACTCATCCATTCTCACCTCATGCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAGGGTGTTCCCTCACCTACTCATCCATTCTCACCTCATGCCTAT  200

seq1  AGCACCCCCATATGCTGAGCTGTGGTAACAGCCTACACAAAACTGTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCCCATATGCTGAGCTGTGGTAACAGCCTACACAAAACTGTTGAT  250

seq1  GCCAAATATGTAGCTGGAATCATGTACCCATCCATGTGTCTTGGTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATGTAGCTGGAATCATGTACCCATCCATGTGTCTTGGTTTGAG  300

seq1  TATGCTTGGTGCAGGGAGTGACAATACTTGGAGGTGTGGCCTTGCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGGTGCAGGGAGTGACAATACTTGGAGGTGTGGCCTTGCTGGAA  350

seq1  TAGGTGTATCACAGTGGACATGAACTTAAGACCCTCACCTTAGCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTATCACAGTGGACATGAACTTAAGACCCTCACCTTAGCTGCCTG  400

seq1  GAAGTCAGTATTCTGCTATCAGCCTTCAGATGAAGATATAGAATTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGTATTCTGCTATCAGCCTTCAGATGAAGATATAGAATTCTCAG  450

seq1  CTCTCCTGCACCATGTCTGCTTAGATGCTGCATTGCTCCTGCCTTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGCACCATGTCTGCTTAGATGCTGCATTGCTCCTGCCTTGATGA  500

seq1  TTATGGAGTGAACATCTGAAATTGTAAGCCACACAGACTTAAT  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGTGAACATCTGAAATTGTAAGCCACACAGACTTAAT  543


seq1: chr17_54846871_54847327
seq2: B6Ng01-338H07.g_140_667 (reverse)

seq1  TCTGAATGTAATTTTTTTCTCAAAATGAGCATCAGTTTTATAATACAGAA  50
      |||||||||||      | ||||| |||||||||   || | ||||||||
seq2  TCTGAATGTAA------TGTCAAATTGAGCATCAAACTTTTTATACAGAA  44

seq1  AACAATGG---AGTCAGATATCACAGCAGGCAAGGTACA-----------  86
       | ||| |   ||| || |  || |   ||||| |||||           
seq2  GAAAATAGGAAAGTTAGGTGACATA-TTGGCAATGTACAATAAGGTTACT  93

seq1  ------TCAAAGTATCTGACACAAAAGAAAGGAATGCCTACA-AAGGACT  129
            | |||   ||| | |||||| | || |||||  ||| || ||||
seq2  GGATGCTTAAAAACTCTTAAACAAAACAGAGAAATGCAAACACAAAGACT  143

seq1  GGCAGGAACCAACTGGGGTAAAATTCAATGTTAACAACTGGGATCAAAAG  179
      ||||||    |||||||  | ||         |||||||| || |||   
seq2  GGCAGG----AACTGGGCAATAA---------AACAACTGAGA-CAATGT  179

seq1  CAGCCCCACCTAAAGTCCTCT-TAATCTTAGAAGTCAG------------  216
      |||| | | |||| |||  || || ||||||||| |||            
seq2  CAGCTCTATCTAAGGTCAGCTATAGTCTTAGAAGCCAGGCATGAGGTCTT  229

seq1  ----------GGGCAAGGTCTTT-GTGCCCTTGCCATAGTTCCTAT----  251
                | |||||| ||||  |||||  | ||| ||||  ||    
seq2  TACACTCCCAGAGCAAGGGCTTTCATGCCCAAGTCATGGTTCTAATTAGG  279

seq1  ---------TCTAG-------TCTATTGTATAGTCC----------ACCC  275
               |||||       |||  || ||| | |          ||| 
seq2  GAATTTCGCTCTAGCTAACCTTCTCATGAATAATGCAATACTCTAAACCA  329

seq1  CATCC----------CCCAGTCCATTGTAAATTCCTGTGTATGGGTGTAA  315
      || ||          ||||  |||||||||||||||||||||||| | ||
seq2  CAGCCTGATCTACTTCCCAAACCATTGTAAATTCCTGTGTATGGGAGCAA  379

seq1  CTCAGCTATCTATAGTTCTAAGTATCTATTCTGG-------TTCCTCCTT  358
      ||    |  || |  ||||||||   || | |||       || || || 
seq2  CT----TGACTTTTATTCTAAGT-GATAGTGTGGGGAGAGTTTTCTACTA  424

seq1  AGACCACAACCTTTCTTTTTCCTAGAT------AATGGTAAATT----CC  398
      | |  |  |   |  | |  | || ||      |||   || ||    | 
seq2  ATA--AGTAATGTAGTCTGCCATATATAACTACAATAAGAATTTTAAACT  472

seq1  TGCATATGGGAGTAGCTTGCCCTGAGATTTCTAACTCTATGTAGTAGATA  448
      ||||| ||  |  |||||||||||||||||||||||||||||||||||||
seq2  TGCAT-TGCTA--AGCTTGCCCTGAGATTTCTAACTCTATGTAGTAGATA  519

seq1  GTAATGCCT  457
      |||| ||||
seq2  GTAAAGCCT  528


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