BAC Information

Click to search

BAC

Clone NameB6Ng01-338J16
Chromosome17 (Build37)
Map Location 22,286,066 - 22,336,982
singlet/doubletdoublet
Overlap geneEG210853, LOC671007, EG240038
Upstream geneEG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844
Downstream geneEG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338J16.bB6Ng01-338J16.g
ACCGA122851GA122852
length1,1701,171
definitionB6Ng01-338J16.b B6Ng01-338J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,286,066 - 22,287,253)(22,335,803 - 22,336,982)
sequence
gaattcttcccattaaagaaaaaaagagaacaaatgaagaggaacattca
ttcatgactgaaattacatggcttataggaagtaataaggtaatactcct
cagaaaaaccctactaatatattccataaataaaaaggtacacagagtag
tgcttacactacttctaaaaaatgaaacaaaggagtaaaagaaaataatc
atctgtatattgagaactgaccacactgaacactgcgcagccacttagag
acaaacaaatttcatttgtcaacacactcatgttcactgtgtaacacaaa
aggccaaaaagagatgccagaatactgcaatctgcatgtcctcacaaaca
catcaatgttacggtcagagaaagctacatattccttccatcatctgttc
ctctatggagttgaaatatttactattaggatttaagacagtgaatatat
tctaattctacttccccataaactctactcatccatatattgctccgtga
tgtcagtgaccatgtatttgaaaagctacattcagaaagatgtttctaga
aaccttactattcctaaaatgcaacttatgtagcacctgagacctccctt
ccccaggaatataaaagggcaccaatgtaaaaattagtcattaaaatatt
atttgagcatcatctacaatattttctctaccagaactgcagttcttcac
tccttggaaatgtatgttctcatagtataaaatccagtgaaaatagaaca
gcacaaggctgtgcttgtcccatttgaagtgaaagatctaaaggcttaat
tttgaccattggcgaagaacaagataaattaaagaagcaaaacacttttg
gtaacattaccagaggtagagaactaaagtttcaaatggcttaaataata
agaggaatttctaagaaggtagactagacactgacctgaggagcatttag
gagagaagcattcattcttcttgttactctcacctgaaaaataaaagtga
aataaatacacctcctttatgaacaatgctaaacatatcaaagcataaat
gaaaatgataccagaaactgtcaacattcctacagaaaggagaacatgat
gatatatttatgtgacaagtaaatgactacatctgagctttttcttaacc
tcggcagcagcaggccaaac
gaattcatacaggagaaagaaccttacagatatgaatgtaacatgtgctt
tacctaaaaattcaattgtcatcttcattagagaattcatacaggagaga
agccttacaaatatagtgaatgtgacaaatgctttacctgcaaaagcagt
cttaaaattcatcagagaattcatgcagaaaaaaatcttaaaaatataat
gaatatgacaaatgctttagccaaaaacagtcacttatcagagaatgcat
acagtagacaccttcacaaatgaagtgaatgaaaaaaatccattcccaaa
gaaaaccatcttagaattcatcagagactacatataggagaaggaactta
tatatatagtaaatgttcatatccttcagtgttggttcaccacttaaaat
acatcaaagaatgcattcaggattaaaaaaaaaaaacttacgaatttgat
atatgaggaaaggtctttacccaaatctcagacctaagaaaatacctgct
tatttatattcagaaaaaaagcgtccactggaaaaactatggcatgtgct
ttattccagcggtattgttggcaacacttgaagctccacactagagaatt
attatatatgtgaggaagttgggaaaacatttaagtaatcctcaaatctt
aggagcgacccagcatttatgctcagagaaatggaaaatacagcaatgaa
ggaaatctttcattaaaagtttttacttgttcacttttaaatatgtcatg
atggagaagcttaaagcatatggagttttataaactttcctggagactga
attgatctacttcaaagagaagctacgaaatacatgcctcaaaatagcta
atgaaactgacagcattctatatgtttaactcaaatgaacatactcaaat
tatacttcttaaaagaggatttgacaaactgagccacaaagatagggtgc
tctttatcctgtagagatgcctacatgtatgaggtttgtaccagtgtcca
gtattcattatctgtatctatgctgcttttcagtttcaggatagcaattg
tctttgagtccctcgtgcctctcatttactactgcctcccttaagtccct
gtgtgtaacaacaataactctcatgattaacggttgactgatgtgcaatt
tccacttgggatggatagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22286066_22287253
seq2: B6Ng01-338J16.b_44_1213

seq1  GAATTCTTCCCATTAAAGAAAAAAAGAGAACAAATGAAGAGGAACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCATTAAAGAAAAAAAGAGAACAAATGAAGAGGAACATTCA  50

seq1  TTCATGACTGAAATTACATGGCTTATAGGAAGTAATAAGGTAATACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTGAAATTACATGGCTTATAGGAAGTAATAAGGTAATACTCCT  100

seq1  CAGAAAAACCCTACTAATATATTCCATAAATAAAAAGGTACACAGAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAACCCTACTAATATATTCCATAAATAAAAAGGTACACAGAGTAG  150

seq1  TGCTTACACTACTTCTAAAAAATGAAACAAAGGAGTAAAAGAAAATAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACACTACTTCTAAAAAATGAAACAAAGGAGTAAAAGAAAATAATC  200

seq1  ATCTGTATATTGAGAACTGACCACACTGAACACTGCGCAGCCACTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATATTGAGAACTGACCACACTGAACACTGCGCAGCCACTTAGAG  250

seq1  ACAAACAAATTTCATTTGTCAACACACTCATGTTCACTGTGTAACACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAATTTCATTTGTCAACACACTCATGTTCACTGTGTAACACAAA  300

seq1  AGGCCAAAAAGAGATGCCAGAATACTGCAATCTGCATGTCCTCACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAAAGAGATGCCAGAATACTGCAATCTGCATGTCCTCACAAACA  350

seq1  CATCAATGTTACGGTCAGAGAAAGCTACATATTCCTTCCATCATCTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGTTACGGTCAGAGAAAGCTACATATTCCTTCCATCATCTGTTC  400

seq1  CTCTATGGAGTTGAAATATTTACTATTAGGATTTAAGACAGTGAATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGAGTTGAAATATTTACTATTAGGATTTAAGACAGTGAATATAT  450

seq1  TCTAATTCTACTTCCCCATAAACTCTACTCATCCATATATTGCTCCGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCTACTTCCCCATAAACTCTACTCATCCATATATTGCTCCGTGA  500

seq1  TGTCAGTGACCATGTATTTGAAAAGCTACATTCAGAAAGATGTTTCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGACCATGTATTTGAAAAGCTACATTCAGAAAGATGTTTCTAGA  550

seq1  AACCTTACTATTCCTAAAATGCAACTTATGTAGCACCTGAGACCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTACTATTCCTAAAATGCAACTTATGTAGCACCTGAGACCTCCCTT  600

seq1  CCCCAGGAATATAAAAGGGCACCAATGTAAAAATTAGTCATTAAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAATATAAAAGGGCACCAATGTAAAAATTAGTCATTAAAATATT  650

seq1  ATTTGAGCATCATCTACAATATTTTCTCTACCAGAACTGCAGTTCTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCATCATCTACAATATTTTCTCTACCAGAACTGCAGTTCTTCAC  700

seq1  TCCTTGGAAATGTATGTTCTCATAGTATAAAATCCAGTGAAAATAGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAAATGTATGTTCTCATAGTATAAAATCCAGTGAAAATAGAACA  750

seq1  GCACAAGGCTGTGCTTGTCCCATTTGAAGTGAAAGATCTAAAGGCTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGCTGTGCTTGTCCCATTTGAAGTGAAAGATCTAAAGGCTTAAT  800

seq1  TTTGACCATTGGCGAAGAACAAGATAAATTAAAGAAGCAAAACACTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATTGGCGAAGAACAAGATAAATTAAAGAAGCAAAACACTTTTG  850

seq1  GTAACATTACCAGAGGTAGAGAACTAAAGTTTCAAATGGCTTAAATAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTACCAGAGGTAGAGAACTAAAGTTTCAAATGGCTTAAATAATA  900

seq1  AGAGGAATTTCTAAGAAAGGTAGACTAGACACTGACCTGAGGAGCATTTA  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGGAATTTCTAAG-AAGGTAGACTAGACACTGACCTGAGGAGCATTTA  949

seq1  GGAGAGAAGCATTCATTCTTCTTGTTACTCTCACCTGAAAAATTAAAAGT  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGAGAAGCATTCATTCTTCTTGTTACTCTCACCTGAAAAA-TAAAAGT  998

seq1  GAAAATAAATACACCTCCTTTATGAACAATGCTAAACCATATAAAAAAAA  1050
      | |||||||||||||||||||||||||||||||||| |||||    ||| 
seq2  G-AAATAAATACACCTCCTTTATGAACAATGCTAAA-CATAT---CAAAG  1043

seq1  CATAAAAATGAAAATGATACCAGAAAACTTGTCAACATTCCTACAGAAAG  1100
      |||  |||||||||||||||||||||   |||||||||||||||||||||
seq2  CAT--AAATGAAAATGATACCAGAAA--CTGTCAACATTCCTACAGAAAG  1089

seq1  GAGAACATGGATGATATATTTAATGTGACAAGTAAAATGACTACAATCTG  1150
      |||||||| |||||||||||| ||||||||||| |||||||||| |||||
seq2  GAGAACAT-GATGATATATTT-ATGTGACAAGT-AAATGACTAC-ATCTG  1135

seq1  AGGCCTTTTTC-TAACCTCGGCAGGCAGCAGGCACAAAC  1188
      ||  ||||||| ||||||||||| ||||||||| |||||
seq2  AG--CTTTTTCTTAACCTCGGCA-GCAGCAGGC-CAAAC  1170

seq1: chr17_22335803_22336982
seq2: B6Ng01-338J16.g_63_1233 (reverse)

seq1  CATCTACCCATCCCAAGTGGAAAATGGCAACAACCAAGTTCAACTCGTTA  50
      |||||| |||||||||||||||| ||   ||| |  || ||||| |||||
seq2  CATCTATCCATCCCAAGTGGAAATTG--CACATC--AG-TCAAC-CGTTA  44

seq1  AACCAATGAGAGTTATTGTTGTTACACACA-GGACTTAGGGGAAGCAGTT  99
      | |  ||||||||||||||||||||||||| ||||||| |||| |||| |
seq2  ATC--ATGAGAGTTATTGTTGTTACACACAGGGACTTAAGGGAGGCAG-T  91

seq1  AGTAAATGAGA-GCACGAGGGACTCAAAGACAATTGCTATCCTGAAACTG  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGAGAGGCACGAGGGACTCAAAGACAATTGCTATCCTGAAACTG  141

seq1  AAAAGCAGCATAAGATACAGATAATGAATACTGGACACTGGTAACAAACC  198
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  AAAAGCAGCAT-AGATACAGATAATGAATACTGGACACTGGT-ACAAACC  189

seq1  TCATACATGTAGGCATCTCTACAGGATAAAGAGCACCCTATCTTTGTGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGTAGGCATCTCTACAGGATAAAGAGCACCCTATCTTTGTGGC  239

seq1  TCAGTTTGTCAAATCCTCTTTTAAGAAGTATAATTTGAGTATGTTCATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGTCAAATCCTCTTTTAAGAAGTATAATTTGAGTATGTTCATTT  289

seq1  GAGTTAAACATATAGAATGCTGTCAGTTTCATTAGCTATTTTGAGGCATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAACATATAGAATGCTGTCAGTTTCATTAGCTATTTTGAGGCATG  339

seq1  TATTTCGTAGCTTCTCTTTGAAGTAGATCAATTCAGTCTCCAGGAAAGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGTAGCTTCTCTTTGAAGTAGATCAATTCAGTCTCCAGGAAAGTT  389

seq1  TATAAAACTCCATATGCTTTAAGCTTCTCCATCATGACATATTTAAAAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTCCATATGCTTTAAGCTTCTCCATCATGACATATTTAAAAGT  439

seq1  GAACAAGTAAAAACTTTTAATGAAAGATTTCCTTCATTGCTGTATTTTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGTAAAAACTTTTAATGAAAGATTTCCTTCATTGCTGTATTTTCC  489

seq1  ATTTCTCTGAGCATAAATGCTGGGTCGCTCCTAAGATTTGAGGATTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGAGCATAAATGCTGGGTCGCTCCTAAGATTTGAGGATTACTT  539

seq1  AAATGTTTTCCCAACTTCCTCACATATATAATAATTCTCTAGTGTGGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTCCCAACTTCCTCACATATATAATAATTCTCTAGTGTGGAGC  589

seq1  TTCAAGTGTTGCCAACAATACCGCTGGAATAAAGCACATGCCATAGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGTTGCCAACAATACCGCTGGAATAAAGCACATGCCATAGTTTT  639

seq1  TCCAGTGGACGCTTTTTTTCTGAATATAAATAAGCAGGTATTTTCTTAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGACGCTTTTTTTCTGAATATAAATAAGCAGGTATTTTCTTAGG  689

seq1  TCTGAGATTTGGGTAAAGACCTTTCCTCATATATCAAATTCGTAAGTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATTTGGGTAAAGACCTTTCCTCATATATCAAATTCGTAAGTTTT  739

seq1  TTTTTTTTAATCCTGAATGCATTCTTTGATGTATTTTAAGTGGTGAACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATCCTGAATGCATTCTTTGATGTATTTTAAGTGGTGAACCA  789

seq1  ACACTGAAGGATATGAACATTTACTATATATATAAGTTCCTTCTCCTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGGATATGAACATTTACTATATATATAAGTTCCTTCTCCTATA  839

seq1  TGTAGTCTCTGATGAATTCTAAGATGGTTTTCTTTGGGAATGGATTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCTGATGAATTCTAAGATGGTTTTCTTTGGGAATGGATTTTTT  889

seq1  TCATTCACTTCATTTGTGAAGGTGTCTACTGTATGCATTCTCTGATAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACTTCATTTGTGAAGGTGTCTACTGTATGCATTCTCTGATAAGT  939

seq1  GACTGTTTTTGGCTAAAGCATTTGTCATATTCATTATATTTTTAAGATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTTTGGCTAAAGCATTTGTCATATTCATTATATTTTTAAGATTT  989

seq1  TTTTCTGCATGAATTCTCTGATGAATTTTAAGACTGCTTTTGCAGGTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATGAATTCTCTGATGAATTTTAAGACTGCTTTTGCAGGTAAA  1039

seq1  GCATTTGTCACATTCACTATATTTGTAAGGCTTCTCTCCTGTATGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCACATTCACTATATTTGTAAGGCTTCTCTCCTGTATGAATTC  1089

seq1  TCTAATGAAGATGACAATTGAATTTTTAGGTAAAGCACATGTTACATTCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGAAGATGACAATTGAATTTTTAGGTAAAGCACATGTTACATTCA  1139

seq1  TATCTGTAAGGTTCTTTCTCCTGTATGAATTC  1180
      ||||||||||||||||||||||||||||||||
seq2  TATCTGTAAGGTTCTTTCTCCTGTATGAATTC  1171