BAC Information

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BAC

Clone NameB6Ng01-339B01
Chromosome17 (Build37)
Map Location 58,724,111 - 58,725,204
singlet/doubletsinglet
Overlap geneEG545216
Upstream geneCntnap5c, LOC674419, LOC620408
Downstream geneLOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B01.bB6Ng01-339B01.g
ACCGA123164GA123165
length6191,090
definitionB6Ng01-339B01.b B6Ng01-339B01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgagtgaggaatacaatactcgtgttggagaggatgtgaagga
agaggaacagtcttccattgttggtgagattggaaactggtacaaccact
ctggaaatcaatctggaggttcctcagaaaattggaaatagatctacctg
cagacccagctataccactcttgggaatatacctaaaggaaagctgaaaa
agtcagatgcaggtatttgcatcaaaccaatggacagaagcagctgaccc
ctgttgttgaattgggaagggctaaaagaaactgtgaaaggtgatcagaa
gggaccagaagtctcaattaatctggatctctgagatctctcaaacccta
gaccactaaacaagcagcaaacctcagctgatatgaggccctggcacaca
tacattagaggacttccggatctgtgtccattcagagatgatgcacctaa
ccctcaggagactggaggccccagggtgtttagatgtcaggtggggcggg
aggtggggaaatccacttgcagacaggggtggggaggagttgtgggactt
ggaatatttagagagtttgcaatgtgggaaaataaaatttgggagtgtaa
gaaaataaatctgactaaa

gaattcactgaattcctaactattcattggagtggaattattaagcacct
ggaagccctccttaacataccactaagtaattgtggttttcaaaacaaaa
caaaaatttaagttcaagattgcttattggtagggaatgaatagccatca
agtttttattttctttttttaatcttaatgacacagtaaatggaattgtt
ggaaatttgggggaaaggagacaattaaaatatttacttagagggccaga
gagaaagctcagtgattaaacacaactggtgtaaacctaaaacctgaagt
caatccccagaacctacatagcagaaaaagagaagtaatccctttaaatt
gtcccttgaccttcacaggtaccatggcacatgaagacgaatggacagat
acaaacattacatacattaaacaaatataaagactttaaattgtctttgt
ttttaattgtctaaattgtttttagttatctttttaagatagtctatcaa
cagctttacagtgatataaatcagttatctctaaagtgagttgtgatgtt
taagcaccaaatctggtttcattttctatacaggtgtctggacattactc
agtgtgagcaatgtgttgatagaaataatgctattaagtttagacatcag
taaccaatcaccaagaagactgagacaacacaaatcgtgaaatggagact
tccagggcaaagattccctgacaccaagtgtgtggatggctttcttttcc
ataggagacccaagtggaataaggaatgctgacataaataggtataaata
tatacattattgctcatatataatttgcatctcagaaactgctgaataaa
ctcaccatttctaatcctttctgaactgaggctggctgattcaagtcagc
tattatgcctccaactcctctcccagctgactgaatttaagcttctcact
gaactgctctgctgaggctcaaattaactgtggaaatttgatctaatcat
ctgcctccttatattctcttgctcaactccctctgctggaatcatgaaca
actggactcactgcactacactcactgtagagggaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58724111_58725204
seq2: B6Ng01-339B01.g_65_1154 (reverse)

seq1  TTCAATCCCTCTACAGTGAGTGTAGTGCAGTGGAGTTCAGTTTGTTCATG  50
      |||| |||||||||||||||||||||||||| |||| ||| |||||||||
seq2  TTCATTCCCTCTACAGTGAGTGTAGTGCAGT-GAGTCCAG-TTGTTCATG  48

seq1  ATTTCAAGCAGAGGGAGTTGAAGCAAGAGAATAATAAGGAGGCAGATGAT  100
      | ||| |||||||||||||| ||||||||||| |||||||||||||||||
seq2  A-TTCCAGCAGAGGGAGTTG-AGCAAGAGAAT-ATAAGGAGGCAGATGAT  95

seq1  TAGATCAAATTTCCACAGTTAATTTGAGCCTCAGCAGAGCAGTTCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAATTTCCACAGTTAATTTGAGCCTCAGCAGAGCAGTTCAGTGA  145

seq1  GAAGCTTAAA-TCAGTCAGCTTGGAGAGGAGTTGGAGGCATAATAGCTGA  199
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  GAAGCTTAAATTCAGTCAGCTGGGAGAGGAGTTGGAGGCATAATAGCTGA  195

seq1  CTTGAATCAGCCAGCCTCAGTTCAGAAAGGATTAGAAATGGTGAGTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCAGCCAGCCTCAGTTCAGAAAGGATTAGAAATGGTGAGTTTAT  245

seq1  TCAGCAGTTTCTGAGATGCAAATTATATATGAGCAATAATGTATATATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTTTCTGAGATGCAAATTATATATGAGCAATAATGTATATATTT  295

seq1  ATACCTATTTATGTCAGCATTCCTTATTCCACTTGGGTCTCCTATGGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATTTATGTCAGCATTCCTTATTCCACTTGGGTCTCCTATGGAAA  345

seq1  AGAAAGCCATCCACACACTTGGTGTCAGGGAATCTTTGCCCTGGAAGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCATCCACACACTTGGTGTCAGGGAATCTTTGCCCTGGAAGTCT  395

seq1  CCATTTCACGATTTGTGTTGTCTCAGTCTTCTTGGTGATTGGTTACTGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCACGATTTGTGTTGTCTCAGTCTTCTTGGTGATTGGTTACTGAT  445

seq1  GTCTAAACTTAATAGCATTATTTCTATCAACACATTGCTCACACTGAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACTTAATAGCATTATTTCTATCAACACATTGCTCACACTGAGTA  495

seq1  ATGTCCAGACACCTGTATAGAAAATGAAACCAGATTTGGTGCTTAAACAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGACACCTGTATAGAAAATGAAACCAGATTTGGTGCTTAAACAT  545

seq1  CACAACTCACTTTAGAGATAACTGATTTATATCACTGTAAAGCTGTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTCACTTTAGAGATAACTGATTTATATCACTGTAAAGCTGTTGAT  595

seq1  AGACTATCTTAAAAAGATAACTAAAAACAATTTAGACAATTAAAAACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCTTAAAAAGATAACTAAAAACAATTTAGACAATTAAAAACAAA  645

seq1  GACAATTTAAAGTCTTTATATTTGTTTAATGTATGTAATGTTTGTATCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTAAAGTCTTTATATTTGTTTAATGTATGTAATGTTTGTATCTG  695

seq1  TCCATTCGTCTTCATGTGCCATGGTACCTGTGAAGGTCAAGGGACAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCGTCTTCATGTGCCATGGTACCTGTGAAGGTCAAGGGACAATTT  745

seq1  AAAGGGATTACTTCTCTTTTTCTGCTATGTAGGTTCTGGGGATTGACTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATTACTTCTCTTTTTCTGCTATGTAGGTTCTGGGGATTGACTTC  795

seq1  AGGTTTTAGGTTTACACCAGTTGTGTTTAATCACTGAGCTTTCTCTCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAGGTTTACACCAGTTGTGTTTAATCACTGAGCTTTCTCTCTGG  845

seq1  CCCTCTAAGTAAATATTTTAATTGTCTCCTTTCCCCCAAATTTCCAACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAAGTAAATATTTTAATTGTCTCCTTTCCCCCAAATTTCCAACAA  895

seq1  TTCCATTTACTGTGTCATTAAGATTAAAAAAAGAAAATAAAAACTTGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTACTGTGTCATTAAGATTAAAAAAAGAAAATAAAAACTTGATG  945

seq1  GCTATTCATTCCCTACCAATAAGCAATCTTGAACTTAAATTTTTGTTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCATTCCCTACCAATAAGCAATCTTGAACTTAAATTTTTGTTTTG  995

seq1  TTTTGAAAACCACAATTACTTAGTGGTATGTTAAGGAGGGCTTCCAGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACCACAATTACTTAGTGGTATGTTAAGGAGGGCTTCCAGGTG  1045

seq1  CTTAATAATTCCACTCCAATGAATAGTTAGGAATTCAGTGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATTCCACTCCAATGAATAGTTAGGAATTCAGTGAATTC  1090


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