BAC Information

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BAC

Clone NameB6Ng01-339P24
Chromosome17 (Build37)
Map Location 89,279,899 - 89,388,199
singlet/doubletdoublet
Overlap geneFshr
Upstream geneLOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867
Downstream geneLOC100043904, LOC100043906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P24.bB6Ng01-339P24.g
ACCGA123841GA123842
length1,046609
definitionB6Ng01-339P24.b B6Ng01-339P24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,387,140 - 89,388,199)(89,279,899 - 89,280,506)
sequence
tatccagttttaggagcagcctgctacctaactcctctcatcaagaccag
tagaaccaaaactcctatgcaagccaaacctctaagctgaatgttgacct
ggcctgtatgtgctgtgaaactaaagtctcccttctcagccatgtaagaa
attcatcttactagaatgtctgctattttgtctattagccggaagctgaa
aattttctacccaagatgatcattgtatttttttccttttctccttatag
agacatctcaaggacaaaggtctattccctgcccaaccatggcttagaaa
atctgaagaagttgagggccaggtcaacataccgcttgaaaaagctccct
agtctagacaagtttgtcatgctcattgaggccagccttacctaccccag
tcactgctgtgcctttgcaaactggaggcggcaaacgtgagtattctatg
tccatctccatgtgtcttgggccttcacacagtgtagaacggcttcctgg
tgacatgaagaaaacccaaatgtggaaagtgctcctcactgaaggcctaa
ggcgtgctcggatcaaagagtcagttctgtggaaggtgtttgggtctttt
ccactcaagagatttacacacataaacaaacccaaaataactgtgccatt
tagaaaataatggcaggatttcttcctaaaatgatgtcatttcaataagt
agcatatgaagagagtttgataaaaagatttgtcttctaagctgcttgat
gaaattactctcctggtcctcattggaaaacaatgcccacaatatgggca
cacactccctcttcctttagaatcaaatgaaggctgctcctcccacagct
gcctgcctcttcttcttctgggggcttccaagggactttaatgctctttc
tcacttccctgctgtctgtgactgtgataagttgagaaaatgctgtcatt
taatgttgctgtgaacttccccttgagcagaatggaagaaaagtaagatt
atatattattcttttacatcaaaatctcccatatgaaagtcacact
gaattcaacatctggcaccgtcaactatggccagtgtgtgtgtgtatttg
tggtttgtggcattcatggggcagatcagaacttcctgggtttatctgtt
ccattagcagtgactgcaggctagacagtcttaccagagagctcagaaac
tagaactcatagctgtgatatagaaatgaaaatgaggttatgaatacatt
ggtggattctggtagatgttgggactctctgagtatggaagagaaggatg
gagagaagagaaccttaaggtcagcttaaccagtgcctctggagccatgc
acatgggttctgagaaggccatattggttagagcatggaggagcccacat
tgtgagagatgacttcagcagctgattctttgtgaagaaaacctgactca
gagcagaatgcttctgcccgtttcccataggagaggcttttccagacctg
caaattatcgtatttcactatgatcctcagcattgcctacacatgatgct
gcattttctgattgtcttagcatagttttgtagaacacaggcaactctgg
tgttttaaagtcctgccataaagaaggactttaaaactccacggattctt
gcttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89387140_89388199
seq2: B6Ng01-339P24.b_61_1106 (reverse)

seq1  AGTGTGACCTTTTCATATGGGGAGAATTTTTGATGGTAAAAAGAAATTAA  50
      ||||||||  |||||||| ||||||  ||||||||   |||||||    |
seq2  AGTGTGAC--TTTCATAT-GGGAGA--TTTTGATG--TAAAAGAA---TA  40

seq1  ATATATATCTTTACTTTTCCTTCCATTTCTGCTCAAGGGGAAAGTTCACA  100
      |||||||   |||||||| |||||| |||||||||||||| |||||||||
seq2  ATATATAATCTTACTTTT-CTTCCA-TTCTGCTCAAGGGG-AAGTTCACA  87

seq1  GCAACATTAAATGACAGCATTTTCTCAAACTTATCACAGTCACAGACAGC  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAACATTAAATGACAGCATTTTCTC-AACTTATCACAGTCACAGACAGC  136

seq1  AGGGAAGTGAGAAAGAGCATTAAAGTCCCTTGGAAGCCCCCAGAAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGAGAAAGAGCATTAAAGTCCCTTGGAAGCCCCCAGAAGAAGA  186

seq1  AGAGGCAGGCAGCTGTGGGAGGAGCAGCCTTCATTTGATTCTAAAGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGCTGTGGGAGGAGCAGCCTTCATTTGATTCTAAAGGAAG  236

seq1  AGGGAGTGTGTGCCCATATTGTGGGCATTGTTTTCCAATGAGGACCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGTGTGCCCATATTGTGGGCATTGTTTTCCAATGAGGACCAGGA  286

seq1  GAGTAATTTCATCAAGCAGCTTAGAAGACAAATCTTTTTATCAAACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTTCATCAAGCAGCTTAGAAGACAAATCTTTTTATCAAACTCTC  336

seq1  TTCATATGCTACTTATTGAAATGACATCATTTTAGGAAGAAATCCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGCTACTTATTGAAATGACATCATTTTAGGAAGAAATCCTGCCA  386

seq1  TTATTTTCTAAATGGCACAGTTATTTTGGGTTTGTTTATGTGTGTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTAAATGGCACAGTTATTTTGGGTTTGTTTATGTGTGTAAATC  436

seq1  TCTTGAGTGGAAAAGACCCAAACACCTTCCACAGAACTGACTCTTTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTGGAAAAGACCCAAACACCTTCCACAGAACTGACTCTTTGATC  486

seq1  CGAGCACGCCTTAGGCCTTCAGTGAGGAGCACTTTCCACATTTGGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACGCCTTAGGCCTTCAGTGAGGAGCACTTTCCACATTTGGGTTTT  536

seq1  CTTCATGTCACCAGGAAGCCGTTCTACACTGTGTGAAGGCCCAAGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGTCACCAGGAAGCCGTTCTACACTGTGTGAAGGCCCAAGACACA  586

seq1  TGGAGATGGACATAGAATACTCACGTTTGCCGCCTCCAGTTTGCAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGGACATAGAATACTCACGTTTGCCGCCTCCAGTTTGCAAAGGC  636

seq1  ACAGCAGTGACTGGGGTAGGTAAGGCTGGCCTCAATGAGCATGACAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGACTGGGGTAGGTAAGGCTGGCCTCAATGAGCATGACAAACT  686

seq1  TGTCTAGACTAGGGAGCTTTTTCAAGCGGTATGTTGACCTGGCCCTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGACTAGGGAGCTTTTTCAAGCGGTATGTTGACCTGGCCCTCAAC  736

seq1  TTCTTCAGATTTTCTAAGCCATGGTTGGGCAGGGAATAGACCTTTGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGATTTTCTAAGCCATGGTTGGGCAGGGAATAGACCTTTGTCCT  786

seq1  TGAGATGTCTCTATAAGGAGAAAAGGAAAAAAATACAATGATCATCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTCTCTATAAGGAGAAAAGGAAAAAAATACAATGATCATCTTGG  836

seq1  GTAGAAAATTTTCAGCTTCCGGCTAATAGACAAAATAGCAGACATTCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATTTTCAGCTTCCGGCTAATAGACAAAATAGCAGACATTCTAG  886

seq1  TAAGATGAATTTCTTACATGGCTGAGAAGGGAGACTTTAGTTTCACAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAATTTCTTACATGGCTGAGAAGGGAGACTTTAGTTTCACAGCA  936

seq1  CATACAGGCCAGGTCAACATTCAGCTTAGAGGTTTGGCTTGCATAGGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGCCAGGTCAACATTCAGCTTAGAGGTTTGGCTTGCATAGGAGT  986

seq1  TTTGGTTCTACTGGTCTTGATGAGAGGAGTTAGGTAGCAGGCTGCTCCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCTACTGGTCTTGATGAGAGGAGTTAGGTAGCAGGCTGCTCCTA  1036

seq1  AAACTGGATA  1060
      ||||||||||
seq2  AAACTGGATA  1046

seq1: chr17_89279899_89280506
seq2: B6Ng01-339P24.g_64_671

seq1  GAATTCAACATCTGGCACCGTCAACTATGGCCAGTGTGTGTGTGTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCTGGCACCGTCAACTATGGCCAGTGTGTGTGTGTATTTG  50

seq1  TGGTTTGTGGCATTCATGGGGCAGATCAGAACTTCCTGGGTTTATCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTGGCATTCATGGGGCAGATCAGAACTTCCTGGGTTTATCTGTT  100

seq1  CCATTAGCAGTGACTGCAGGCTAGACAGTCTTACCAGAGAGCTCAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCAGTGACTGCAGGCTAGACAGTCTTACCAGAGAGCTCAGAAAC  150

seq1  TAGAACTCATAGCTGTGATATAGAAATGAAAATGAGGTTATGAATACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCATAGCTGTGATATAGAAATGAAAATGAGGTTATGAATACATT  200

seq1  GGTGGATTCTGGTAGATGTTGGGACTCTCTGAGTATGGAAGAGAAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTCTGGTAGATGTTGGGACTCTCTGAGTATGGAAGAGAAGGATG  250

seq1  GAGAGAAGAGAACCTTAAGGTCAGCTTAACCAGTGCCTCTGGAGCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGAGAACCTTAAGGTCAGCTTAACCAGTGCCTCTGGAGCCATGC  300

seq1  ACATGGGTTCTGAGAAGGCCATATTGGTTAGAGCATGGAGGAGCCCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTTCTGAGAAGGCCATATTGGTTAGAGCATGGAGGAGCCCACAT  350

seq1  TGTGAGAGATGACTTCAGCAGCTGATTCTTTGTGAAGAAAACCTGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGATGACTTCAGCAGCTGATTCTTTGTGAAGAAAACCTGACTCA  400

seq1  GAGCAGAATGCTTCTGCCCGTTTCCCATAGGAGAGGCTTTTCCAGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAATGCTTCTGCCCGTTTCCCATAGGAGAGGCTTTTCCAGACCTG  450

seq1  CAAATTATCGTATTTCACTATGATCCTCAGCATTGCCTACACATGATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATCGTATTTCACTATGATCCTCAGCATTGCCTACACATGATGCT  500

seq1  GCATTTTCTGATTGTCTTAGCATAGTTTTGTAGAACACAGGCAACTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTGATTGTCTTAGCATAGTTTTGTAGAACACAGGCAACTCTGG  550

seq1  TGTTTTAAAGTCCTGCAAGAAAGAAGGACTTTAAAACACCAAGGACTCTT  600
      |||||||||||||||| | |||||||||||||||||| ||| ||| ||||
seq2  TGTTTTAAAGTCCTGCCATAAAGAAGGACTTTAAAACTCCACGGATTCTT  600

seq1  GCTTCTTT  608
      ||||||||
seq2  GCTTCTTT  608