BAC Information

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BAC

Clone NameB6Ng01-340H18
Chromosome17 (Build37)
Map Location 91,479,404 - 91,594,552
singlet/doubletdoublet
Overlap geneNrxn1, EG668871, LOC668872
Upstream genenone
Downstream geneLOC627235, LOC100043741, LOC100043742, EG640442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340H18.bB6Ng01-340H18.g
ACCGA124176GA124177
length1,1381,131
definitionB6Ng01-340H18.b B6Ng01-340H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,479,404 - 91,480,540)(91,593,427 - 91,594,552)
sequence
gaattctctctaaagattatcttatatcttagtgttaatatataatttat
aaatgtactggttttcatcaagaagcaatcatttttaatttgaaggaatt
tctttgaagttgatttgctcttacacacagtaaaatacacaaatcttctg
tgtatagtcagataatcctcacaattatgtatcccaaacaactaccaccc
aggcccaaagttccactctctgtcaacatcactcgtcagttcctctattc
tgacctctgtcattatagattacttgtatttctttaactctccatacaaa
tgggattataatattatttgtatgagtttttgtcctaagttatatgtgtt
tggtttagattttacacaagagaaacaagaaaactaaaattgttactatg
ttcgccatatatcaatgtgcagtagaagaataccatcaaatctgggcatc
agtgatcaaaagaatatcaaaataaacctaaagtgatactactaaagtag
tacttaatttttgaccttgaatatgacatcctaccaacagcacactgagt
agatttagagtattgtaagaaaccctaaatcatacaaaccctaaatcaca
aatcaaccactctcacacactctgtatggtaggtcagctggaaccataaa
agttttagctgactatgaggctttttagaacctaaaccacagaacataag
tggccttatcctaatttaatgcttatttaaaggcaaagtctcaactaaaa
ttgtttcttcatatcttaaatcatgttctgtttgcacgcacacacacaca
cacacacacacacacacacacacacacacacacacactatgtaaatgata
aggcagtaacgaaatctgagaaagcatcttcctatctccatttctatact
ggagtagaaatattcataatctatactgaggacagtagagacaaaaccac
agagtcgtggaaaaactcaatagaaaatggacagcaaaacattttttttc
atcacccaattagagcttttgaaatttactgttcaagaaactatgcaaat
atatccattcttgtacttctaagtaaggagggggaaaagtattggagcca
tagaacatttcagagtgcataatataccatgtacactt

gaattctatgaagaaatctaaacaaggtaatattaaagaagtaggataaa
catataggctagtctgatggctcagagaggatatgtgttcaatctctagg
atgcacttggtacaatgaaaacacaactctttaaaattttctgaacccag
cacatagactgcagcatgtgcatttgctggcatataccacataccaataa
ataagttaagcaaagggttttaaaaaatgaaaggagtaagagagatacta
taaattggttggctataataaatctgtattctatatgaaaatgtgatgta
gaactgaaaagaggacaaccatgtgcttcaattattccactcaaatacat
atgcttgaaggaatctgtgtcagaacatcactgagacataaattcattca
tgtttattgtggtactcttcataataaaaagaatatgctaccaggttgtc
tcccatcaagtcaatgggtaaagaaaattatgtatgagtatatgtatatg
tccaaatacttatacatatgaatggtgataaagaagaacaaaagtgccat
tcttaaagaataaatagcactggagaccaccttgctaaacaatataagtt
tgagtaaaaaaaaaatgtagcttattttctcctttatttagaaacagccc
ctcttctctgtgctctctctctctctctctctctctctctctctctctct
ctctctccttttcgcatacacaacacacagatacgcacatgcacatgcac
aaaccaaatcaataaacaaatgacatcaaagtaaaaagagtacttgttga
gagaagaaagaagaccaaattaagtgatggggcagtgagtaggaacaagg
aagcacaggaaacacaggaagatttcacagagaaacacataccttgtact
ttataataattgttgttaatttcaggagatatttaaacttagacatgaat
gacaaaattaaactaattgtattgtgaaaaacagtaaaaaatagacagat
gtcattttatgaattttttaatgctgcctctgtctggtctttaaattatc
ttagaaaatcgacttcatgggtgtttttgtttccaattctaagaaaggca
aagtgttcaactttggtcttcgttcttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_91479404_91480540
seq2: B6Ng01-340H18.b_45_1182

seq1  GAATTCTCTCTAAAGATTATCTTATATCTTAGTGTTAATATATAATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAAAGATTATCTTATATCTTAGTGTTAATATATAATTTAT  50

seq1  AAATGTACTGGTTTTCATCAAGAAGCAATCATTTTTAATTTGAAGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACTGGTTTTCATCAAGAAGCAATCATTTTTAATTTGAAGGAATT  100

seq1  TCTTTGAAGTTGATTTGCTCTTACACACAGTAAAATACACAAATCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAGTTGATTTGCTCTTACACACAGTAAAATACACAAATCTTCTG  150

seq1  TGTATAGTCAGATAATCCTCACAATTATGTATCCCAAACAACTACCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTCAGATAATCCTCACAATTATGTATCCCAAACAACTACCACCC  200

seq1  AGGCCCAAAGTTCCACTCTCTGTCAACATCACTCGTCAGTTCCTCTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAAGTTCCACTCTCTGTCAACATCACTCGTCAGTTCCTCTATTC  250

seq1  TGACCTCTGTCATTATAGATTACTTGTATTTCTTTAACTCTCCATACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTGTCATTATAGATTACTTGTATTTCTTTAACTCTCCATACAAA  300

seq1  TGGGATTATAATATTATTTGTATGAGTTTTTGTCCTAAGTTATATGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTATAATATTATTTGTATGAGTTTTTGTCCTAAGTTATATGTGTT  350

seq1  TGGTTTAGATTTTACACAAGAGAAACAAGAAAACTAAAATTGTTACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGATTTTACACAAGAGAAACAAGAAAACTAAAATTGTTACTATG  400

seq1  TTCGCCATATATCAATGTGCAGTAGAAGAATACCATCAAATCTGGGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCATATATCAATGTGCAGTAGAAGAATACCATCAAATCTGGGCATC  450

seq1  AGTGATCAAAAGAATATCAAAATAAACCTAAAGTGATACTACTAAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCAAAAGAATATCAAAATAAACCTAAAGTGATACTACTAAAGTAG  500

seq1  TACTTAATTTTTGACCTTGAATATGACATCCTACCAACAGCACACTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAATTTTTGACCTTGAATATGACATCCTACCAACAGCACACTGAGT  550

seq1  AGATTTAGAGTATTGTAAGAAACCCTAAATCATACAAACCCTAAATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGAGTATTGTAAGAAACCCTAAATCATACAAACCCTAAATCACA  600

seq1  AATCAACCACTCTCACACACTCTGTATGGTAGGTCAGCTGGAACCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCACTCTCACACACTCTGTATGGTAGGTCAGCTGGAACCATAAA  650

seq1  AGTTTTAGCTGACTATGAGGCTTTTTAGAACCTAAACCACAGAACATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGCTGACTATGAGGCTTTTTAGAACCTAAACCACAGAACATAAG  700

seq1  TGGCCTTATCCTAATTTAATGCTTATTTAAAGGCAAAGTCTCAACTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTATCCTAATTTAATGCTTATTTAAAGGCAAAGTCTCAACTAAAA  750

seq1  TTGTTTCTTCATATCTTAAATCATGTTCTGTTTGCACGCACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTTCATATCTTAAATCATGTTCTGTTTGCACGCACACACACACA  800

seq1  CACACACACACACACACACACACACACACACACACACTATGTAAATGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACTATGTAAATGATA  850

seq1  AGGCAGTAACGAAATCTGAGAAAGCATCTTCCTATCTCCATTTCTATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTAACGAAATCTGAGAAAGCATCTTCCTATCTCCATTTCTATACT  900

seq1  GGAGTAGAAATATTCATAATCTATACTGAGGACAGTAGAGACAAAACCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGAAATATTCATAATCTATACTGAGGACAGTAGAGACAAAACCAC  950

seq1  AGAGTCGTGGAAAAACTCAATAGAAAATGGACAGCAAAACATTTTTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGTGGAAAAACTCAATAGAAAATGGACAGCAAAACATTTTTTTTC  1000

seq1  ATCACCCAATTAGAGCTTTTGAAATTTACTGTTCAAGAAACTATGCAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCAATTAGAGCTTTTGAAATTTACTGTTCAAGAAACTATGCAAAT  1050

seq1  ATATCCATTCTTGTACTTCTAAGTAAGGAGGGGGAAAAGTATT-GAGCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATATCCATTCTTGTACTTCTAAGTAAGGAGGGGGAAAAGTATTGGAGCCA  1100

seq1  TAGAACA-TTCAGAAGTGCATAATAATACATGTACACTT  1137
      ||||||| ||||| |||||||||||   |||||||||||
seq2  TAGAACATTTCAG-AGTGCATAATATACCATGTACACTT  1138


seq1: chr17_91593427_91594552
seq2: B6Ng01-340H18.g_67_1197 (reverse)

seq1  CAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCTTTCTTAGAATTG  50
      |||||||||||||||||||||| || |||||||| |||||||||||||||
seq2  CAAGAAGAACGAAGACCAAAGT-TGAACACTTTG-CCTTTCTTAGAATTG  48

seq1  GAAAC-AAAACACCCATGGAGGTCGATATTCTTAAGAT-ATTTAAAGACC  98
      ||||| ||||||||||| || |||||| ||| |||||| |||||||||||
seq2  GAAACAAAAACACCCAT-GAAGTCGATTTTC-TAAGATAATTTAAAGACC  96

seq1  AGACAGA-GCA-CATTAAAAAATTCAT-AAATGACATCTGTCTATTTTTT  145
      ||||||| ||| ||||||||||||||| ||||||||||||||||||||||
seq2  AGACAGAGGCAGCATTAAAAAATTCATAAAATGACATCTGTCTATTTTTT  146

seq1  ACTGTTTTTCAC-ATACAATTAGTTT-ATTTTGTCATTCATGTCT-AGTT  192
      |||||||||||| ||||||||||||| |||||||||||||||||| ||||
seq2  ACTGTTTTTCACAATACAATTAGTTTAATTTTGTCATTCATGTCTAAGTT  196

seq1  TAAATATCTCCTG-AATTAACAACAATTATTAT-AAGTACAAGGTATGTG  240
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TAAATATCTCCTGAAATTAACAACAATTATTATAAAGTACAAGGTATGTG  246

seq1  TTTCTCTGTGAAATCTTCCTGTGTTTCCCTGTGCTTTCCTTGTTCCTACT  290
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTTCTCTGTGAAATCTTCCTGTGTTT-CCTGTGC-TTCCTTGTTCCTACT  294

seq1  CACTGCCCCATCACCTAATTTGGTCTTCTTTCTTCTCTCAACAAGTACTC  340
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACTGCCCCATCACTTAATTTGGTCTTCTTTCTTCTCTCAACAAGTACTC  344

seq1  TTTTTACTTTGATGTCATTTGTTTATTGATTTGGTTTGTGCATGTGCATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTGATGTCATTTGTTTATTGATTTGGTTTGTGCATGTGCATG  394

seq1  TGCGTATCTGTGTGTTGTGTATGAG-AAAGGAGAGAGAGAGAGAGAGAGA  439
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TGCGTATCTGTGTGTTGTGTATGCGAAAAGGAGAGAGAGAGAGAGAGAGA  444

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGCACAGAGAAGAGGGGCTGTTTCTAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGCACAGAGAAGAGGGGCTGTTTCTAA  494

seq1  ATAAAGGAGAAAATAAGCTACATTTTTTTTTTACTCAAACTTATATTGTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAGAAAATAAGCTACATTTTTTTTTTACTCAAACTTATATTGTT  544

seq1  TAGCAAGGTGGTCTCCAGTGCTATTTATTCTTTAAGAATGGCACTTTTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGGTGGTCTCCAGTGCTATTTATTCTTTAAGAATGGCACTTTTGT  594

seq1  TCTTCTTTATCACCATTCATATGTATAAGTATTTGGACATATACATATAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTATCACCATTCATATGTATAAGTATTTGGACATATACATATAC  644

seq1  TCATACATAATTTTCTTTACCCATTGACTTGATGGGAGACAACCTGGTAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATAATTTTCTTTACCCATTGACTTGATGGGAGACAACCTGGTAG  694

seq1  CATATTCTTTTTATTATGAAGAGTACCACAATAAACATGAATGAATTTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTTTTATTATGAAGAGTACCACAATAAACATGAATGAATTTAT  744

seq1  GTCTCAGTGATGTTCTGACACAGATTCCTTCAAGCATATGTATTTGAGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTGATGTTCTGACACAGATTCCTTCAAGCATATGTATTTGAGTG  794

seq1  GAATAATTGAAGCACATGGTTGTCCTCTTTTCAGTTCTACATCACATTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGAAGCACATGGTTGTCCTCTTTTCAGTTCTACATCACATTTT  844

seq1  CATATAGAATACAGATTTATTATAGCCAACCAATTTATAGTATCTCTCTT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAATACAGATTTATTATAGCCAACCAATTTATAGTATCTCTCTT  894

seq1  ACTCCTTTCATTTTTTAAAACCCTTTGCTTAACTTATTTATTGGTATGTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTCATTTTTTAAAACCCTTTGCTTAACTTATTTATTGGTATGTG  944

seq1  GTATATGCCAGCAAATGCACATGCTGCAGTCTATGTGCTGGGTTCAGAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCCAGCAAATGCACATGCTGCAGTCTATGTGCTGGGTTCAGAAA  994

seq1  ATTTTAAAGAGTTGTGTTTTCATTGTACCAAGTGCATCCTAGAGATTGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGAGTTGTGTTTTCATTGTACCAAGTGCATCCTAGAGATTGAA  1044

seq1  CACATATCCTCTCTGAGCCATCAGACTAGCCTATATGTTTATCCTACTTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCCTCTCTGAGCCATCAGACTAGCCTATATGTTTATCCTACTTC  1094

seq1  TTTAATATTACCTTGTTTAGATTTCTTCATAGAATTC  1126
      |||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTACCTTGTTTAGATTTCTTCATAGAATTC  1131


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