BAC Information

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BAC

Clone NameB6Ng01-340J18
Chromosome17 (Build37)
Map Location 20,011,648 - 20,166,452
singlet/doubletdoublet
Overlap geneLOC670534, EG627664, V2r7
Upstream geneEG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465
Downstream geneLOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340J18.bB6Ng01-340J18.g
ACCGA124255GA124256
length1,080858
definitionB6Ng01-340J18.b B6Ng01-340J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,165,373 - 20,166,452)(20,011,648 - 20,012,501)
sequence
gaattcatttaatcatatcaggaagaaaacacaatctagaaggaagaaat
ctcctaaaatgtagttgataaaaataaatgtagccttaagttaacaacat
cataaaggggattattcatatatcattctaaaatatgttgttcaattata
gtatgaatacaattttatcagtggttattcctttattcaactatattata
gtgtgatagtgtgaaagccatttatttccatgtttgaaaaccacaatttt
tctggtgattcaatatctctgagttgaagacctgatgcttctattcctgg
atcatttcaaatgtttgtatcttcacttgatagaaattcttccattcatt
tattgttttgattacatttaacttcataagtatttttccttctgcctgaa
ttattaaacatttagtgtggaaagtctattggaatgtaatttcttaaggt
ttattaatcatacaaaatcttacctgccatataactagtgtttaaaatgt
ttatctatttaattttcaacatatcagttttgaacaagaacatggtatat
gtatagctgtcaaggcatttaattactttataatggtccgtttgaattaa
ttttgtttatatttaaaaccacagcctgtcataatttaaatgaaagcttt
aataatgtaatagtattctagttcctggcattatgtttgcatattatctt
agtttgaaagttcatttagaaatgtattttattacccaaagtgaaatatg
aatcaaagagaaaaatccacttaaagcccatattcataatttgacagaat
ttattacttgttcagctgtttgaaagtcagatgactaccctcacatgttt
taaatttagacatttacacatatattatgtagcatttacttttctggtgc
atcaaatcatctgagaattgctggtgtcacagcttgttcatgttcaattt
tgtattgttcttaaaacaaactgtttatttgattttttattcatttaatt
ttctcacactcattttcttttttttaattaggtattagctcatttacatt
tccaatgctatataaccaaaagtcccccat
gaattctttaattctttcttctgcctgaaatagcaaaacatttagattgg
aaagtccattgaaatataacttctttctttctttctttctttctttcttt
ctttctttctttctttctttatttctttctctctctctttttctctctct
ctctctttctttctttctttctttcttgttggttgcttgtttggttggtt
gttttttttttgtttttgtttttgttttttatttttttggttttttggtt
ttttgagacagggtttctctgagtagtcctggtggtcctggtcactttgt
agacgaggctgacctcaaactcacaaatctgcctggctctgcctcccaag
tgctgcccagctggaatataacttcttaatgtctgttaattaatcgtact
aaaaactcaattgttatataagtagtgtttaaatttattatatatttaat
tttcaatataccatatttgaaaatgaatgacatggtatatgtaaagctct
catggaatttaaataatatatataatggtctgtttttatttatttgttta
tattgaatgtaccacgtcatactttaaataaaaaagatttataatgatat
aacattctagtgaatggaattttgttttgcatactaacttagtgtgaagt
ttcatttagaaatatatttttactatccaaagtaaaatatgaaatcaacc
aaagtcatccaattagagcccatatccataatttgacaaaatgtacgaca
catccagctgtttgaatgatagctgacaggctggtgagatggctttagtg
ggtaagagcactgactgctcttccgaaggtccctgagttcaaattccagc
aaccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20165373_20166452
seq2: B6Ng01-340J18.b_46_1125 (reverse)

seq1  ATGGGGGACTTTTGG---TATAGCATTGGAAATGTAAATGAGCTAAATAC  47
      |||||||||||||||   |||||||||||||||||||||||||| |||||
seq2  ATGGGGGACTTTTGGTTATATAGCATTGGAAATGTAAATGAGCT-AATAC  49

seq1  CTAATTAAAAAAAAAGAAAATGAGGTGTGAGAAAATTAAATGAATAAAAA  97
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAATT-AAAAAAAAGAAAATGA-GTGTGAGAAAATTAAATGAATAAAAA  97

seq1  ATCAAATAAACAGTTTGTTTTAAGAACAATACAAAATTGAACATGAACAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAACAGTTTGTTTTAAGAACAATACAAAATTGAACATGAACAA  147

seq1  GCTGTGACACCAGCAATTCTCAGATGATTTGATGCACCAGAAAAGTAAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACACCAGCAATTCTCAGATGATTTGATGCACCAGAAAAGTAAAT  197

seq1  GCTACATAATATATGTGTAAATGTCTAAATTTAAAACATGTGAGGGTAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAATATATGTGTAAATGTCTAAATTTAAAACATGTGAGGGTAGT  247

seq1  CATCTGACTTTCAAACAGCTGAACAAGTAATAAATTCTGTCAAATTATGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTTTCAAACAGCTGAACAAGTAATAAATTCTGTCAAATTATGA  297

seq1  ATATGGGCTTTAAGTGGATTTTTCTCTTTGATTCATATTTCACTTTGGGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGCTTTAAGTGGATTTTTCTCTTTGATTCATATTTCACTTTGGGT  347

seq1  AATAAAATACATTTCTAAATGAACTTTCAAACTAAGATAATATGCAAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATACATTTCTAAATGAACTTTCAAACTAAGATAATATGCAAACA  397

seq1  TAATGCCAGGAACTAGAATACTATTACATTATTAAAGCTTTCATTTAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGGAACTAGAATACTATTACATTATTAAAGCTTTCATTTAAAT  447

seq1  TATGACAGGCTGTGGTTTTAAATATAAACAAAATTAATTCAAACGGACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGGCTGTGGTTTTAAATATAAACAAAATTAATTCAAACGGACCA  497

seq1  TTATAAAGTAATTAAATGCCTTGACAGCTATACATATACCATGTTCTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGTAATTAAATGCCTTGACAGCTATACATATACCATGTTCTTGT  547

seq1  TCAAAACTGATATGTTGAAAATTAAATAGATAAACATTTTAAACACTAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTGATATGTTGAAAATTAAATAGATAAACATTTTAAACACTAGT  597

seq1  TATATGGCAGGTAAGATTTTGTATGATTAATAAACCTTAAGAAATTACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCAGGTAAGATTTTGTATGATTAATAAACCTTAAGAAATTACAT  647

seq1  TCCAATAGACTTTCCACACTAAATGTTTAATAATTCAGGCAGAAGGAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGACTTTCCACACTAAATGTTTAATAATTCAGGCAGAAGGAAAA  697

seq1  ATACTTATGAAGTTAAATGTAATCAAAACAATAAATGAATGGAAGAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATGAAGTTAAATGTAATCAAAACAATAAATGAATGGAAGAATTT  747

seq1  CTATCAAGTGAAGATACAAACATTTGAAATGATCCAGGAATAGAAGCATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAGTGAAGATACAAACATTTGAAATGATCCAGGAATAGAAGCATC  797

seq1  AGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCAACTCAGAGATATTGAATCACCAGAAAAATTGTGGTTTTCAA  847

seq1  ACATGGAAATAAATGGCTTTCACACTATCACACTATAATATAGTTGAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAATAAATGGCTTTCACACTATCACACTATAATATAGTTGAATA  897

seq1  AAGGAATAACCACTGATAAAATTGTATTCATACTATAATTGAACAACATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAACCACTGATAAAATTGTATTCATACTATAATTGAACAACATA  947

seq1  TTTTAGAATGATATATGAATAATCCCCTTTATGATGTTGTTAACTTAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATGATATATGAATAATCCCCTTTATGATGTTGTTAACTTAAGG  997

seq1  CTACATTTATTTTTATCAACTACATTTTAGGAGATTTCTTCCTTCTAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTATTTTTATCAACTACATTTTAGGAGATTTCTTCCTTCTAGAT  1047

seq1  TGTGTTTTCTTCCTGATATGATTAAATGAATTC  1080
      |||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCTTCCTGATATGATTAAATGAATTC  1080

seq1: chr17_20011648_20012501
seq2: B6Ng01-340J18.g_63_920

seq1  GAATTCTTTAATTCTTTCTTCTGCCTGAAATAGCAAAACATTTAGATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATTCTTTCTTCTGCCTGAAATAGCAAAACATTTAGATTGG  50

seq1  AAAGTCCATTGAAATATAACTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCATTGAAATATAACTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  100

seq1  CTTTCTTTCTTTCTTTCTTTATTTCTTTCTCTCTCTCTTTTTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTATTTCTTTCTCTCTCTCTTTTTCTCTCTCT  150

seq1  CTCTCTTTCTTTCTTTCTTTCTTTCTTGTTGGTTGCTTGTTTGGTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTTTCTTTCTTTCTTTCTTGTTGGTTGCTTGTTTGGTTGGTT  200

seq1  GTTTTTTTTTTGTTTTTGTTTTTGTTTTTTATTTTTTTGGTTTTTTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTGTTTTTGTTTTTGTTTTTTATTTTTTTGGTTTTTTGGTT  250

seq1  TTTTGAGACAGGGTTTCTCTGAGTAGTCCTGGTGGTCCTGGTCACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGAGTAGTCCTGGTGGTCCTGGTCACTTTGT  300

seq1  AGACGAGGCTGACCTCAAACTCACAAATCTGCCTGGCTCTGCCTCCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGGCTGACCTCAAACTCACAAATCTGCCTGGCTCTGCCTCCCAAG  350

seq1  TGCTGCCCAGCTGGAATATAACTTCTTAATGTCTGTTAATTAATCGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCAGCTGGAATATAACTTCTTAATGTCTGTTAATTAATCGTACT  400

seq1  AAAAACTCAATTGTTATATAAGTAGTGTTTAAATTTATTATATATTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAATTGTTATATAAGTAGTGTTTAAATTTATTATATATTTAAT  450

seq1  TTTCAATATACCATATTTGAAAATGAATGACATGGTATATGTAAAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATACCATATTTGAAAATGAATGACATGGTATATGTAAAGCTCT  500

seq1  CATGGAATTTAAATAATATATATAATGGTCTGTTTTTATTTATTTGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTTAAATAATATATATAATGGTCTGTTTTTATTTATTTGTTTA  550

seq1  TATTGAATGTACCACGTCATACTTTAAATAAAAAAGATTTATAATGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATGTACCACGTCATACTTTAAATAAAAAAGATTTATAATGATAT  600

seq1  AACATTCTAGTGAATGGAATTTTGTTTTGCATACTAACTTAGTGTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTAGTGAATGGAATTTTGTTTTGCATACTAACTTAGTGTGAAGT  650

seq1  TTCATTTAGAAATATA-TTTTACTATCCAAAGTAAAATATG-AATCAACC  698
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  TTCATTTAGAAATATATTTTTACTATCCAAAGTAAAATATGAAATCAACC  700

seq1  AAAGTCATCCAATTAGAGCCCATATCCATAATTTGACAAAATGTACGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCCAATTAGAGCCCATATCCATAATTTGACAAAATGTACGACA  750

seq1  CATCCAGCTGTTTGAATGATAGCTGACAGGCTGGTGAGATGGC-TTAGTG  797
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATCCAGCTGTTTGAATGATAGCTGACAGGCTGGTGAGATGGCTTTAGTG  800

seq1  GGTAAGAGCACTGACTGCTCTTCCGAAGGT-CCTGAGTTCAAATTCCAGC  846
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTAAGAGCACTGACTGCTCTTCCGAAGGTCCCTGAGTTCAAATTCCAGC  850

seq1  AACCACAT  854
      ||||||||
seq2  AACCACAT  858