BAC Information

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BAC

Clone NameB6Ng01-340P06
Chromosome17 (Build37)
Map Location 82,032,675 - 82,033,871
singlet/doubletsinglet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340P06.bB6Ng01-340P06.g
ACCGA124490GA124491
length1,1941,229
definitionB6Ng01-340P06.b B6Ng01-340P06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcataccacttgtgataattatgatttatcattttgtgctgtga
ttctttttctttttcttccactacgtttgaggttgaaggaaaaggaagtt
tccttctagtaagaaattattattttgttgctttgtttttctgaacatac
tgatagattaaaacatagaaatttgtaagaattagagccagtggggggta
aaggcacgctacagacatctggcagtgctaatgccactgccaggctgcat
cgaatgccatttggggtgacaatttaattctttgaacctatttaattccc
ttgtgtaaaagcctttgttgcctccatttctctgcaatctattcaagagc
cacctgttgaggtcctactagatattaatcatggtaacactatattgccc
tgaaatagatctgctaattcctcaaagggctggtgtgaaaacgaaatgga
gatttagagaccttgtaaccagacaagtgttgctaccagaaaacgctcat
ctttgttgtctcccacattcaagctttcaagtggcctgagctctccgctc
tgcaaaatccattttgcttcattcacttcctttatcaaagtggtgagctc
actgcaggggcatacttttggaatagcatatttctttgtagttaccattt
ttttttgctaggctaatagacaagtgctcaagcacttctaccctgcatat
aaatacattcaaatgtgtgtgtgagcacacacacacacacacacacacac
acacacacacacacatacacacacacacaccccacatattgaggtttggt
cttttgctatgctaaacactggttgcttccagagatccaagtggtgctat
gtgactttggaccccaagttatcctggattgctgaataaagatagcaaca
gccaatagatgggcagaagagacattggcagggatttagggttcctggtc
taggagtcagaggagaaccacatggtggaaaaaaagaagtaaagaagaag
agaagactcatgggataagactcttaaaataatgccatggtgggctgacc
aaatgggagtaagaagcacacagatgaacatggcaattatatatttgaat
atttagcttggaaaatagaacataatggcatagaggttacatattctgcc
agctcttggctgactaggctacataaattaagggttgtgtatgt

gaattctttgggctttaacacagtgaatttgccttaatattacctgcctc
agcagtcttcgctgtgagtcagtgtttctcaaagtcatttttgtaaactt
ttatttttttaagacttacatgaaatttcacatgaaaaagtgggtgggta
agaaacatgattttaaggtctgaaaagaaacttccatggagttttggaga
tttccaaactataactttttaaaagaattaactgacgggtaagcattgta
aattttatattcaaagtgcagattgtgagtataatttgttgaattgaggc
atgtatgtatacagataaataagacagatagatgataggtaaatacatgg
tagatagatagatagatagatagatagatagatagagacatagagacata
gagacatagagacatagataaataataaatttcaatttcttcaattttat
attttaacaaaaatgcacatgcaggatatttaacctcactatgaaccctg
gaattatgttgtttactggaaaaagtcatgtctagttgtgatatagctca
gccctagcacatccctttaatctctgtggctggaatacagacatgctctt
agtacatccctataatcccaaacaatgaaggtaaagttagttttgagaaa
gatgcaccagtgttttaaagtgatgtctagttgagtgacagacaaagtga
agagtcagaggaagatctgttaaaatagcatatgcccaacttaaatgaaa
agagaggtgaaagtaggggatacttgagcagggccagagagagagagaga
gaagaggagacagttttacaggacagttatagagaagcaggttaaaaaga
gaaccaactagacaaaagtgaaaacagaacgagccagagaatgagaagga
gtcagaagataagagagattaccaaaattagtatgaggcaggcagagaga
gttcaggagaagctgagagagccagattcatcagtagaatgaaatgagtt
tttaaccaggacactgagttgacagctgcaagagttcagattaacctaga
aatgagaggctctccacagttaattctcagaaggcttaaagcatgctagc
cttgaatagaatttctatggagttccggattccagaacatgactagttag
ccgaagaagaggccgtagctcttgcatcacaagtcacccaggccaaatat
aatgtagatgcctctgatgagagaaccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82032675_82033871
seq2: B6Ng01-340P06.b_50_1243

seq1  GAATTCTCATACCACTTGTGATAATTATGATTTATCATTTTGTGCTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATACCACTTGTGATAATTATGATTTATCATTTTGTGCTGTGA  50

seq1  TTCTTTTTCTTTTTCTTCCACTACGTTTGAGGTTGAAGGAAAAGGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCTTTTTCTTCCACTACGTTTGAGGTTGAAGGAAAAGGAAGTT  100

seq1  TCCTTCTAGTAAGAAATTATTATTTTGTTGCTTTGTTTTTCTGAACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTAGTAAGAAATTATTATTTTGTTGCTTTGTTTTTCTGAACATAC  150

seq1  TGATAGATTAAAACATAGAAATTTGTAAGAATTAGAGCCAGTGGGGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATTAAAACATAGAAATTTGTAAGAATTAGAGCCAGTGGGGGGTA  200

seq1  AAGGCACGCTACAGACATCTGGCAGTGCTAATGCCACTGCCAGGCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACGCTACAGACATCTGGCAGTGCTAATGCCACTGCCAGGCTGCAT  250

seq1  CGAATGCCATTTGGGGTGACAATTTAATTCTTTGAACCTATTTAATTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGCCATTTGGGGTGACAATTTAATTCTTTGAACCTATTTAATTCCC  300

seq1  TTGTGTAAAAGCCTTTGTTGCCTCCATTTCTCTGCAATCTATTCAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAAAGCCTTTGTTGCCTCCATTTCTCTGCAATCTATTCAAGAGC  350

seq1  CACCTGTTGAGGTCCTACTAGATATTAATCATGGTAACACTATATTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTGAGGTCCTACTAGATATTAATCATGGTAACACTATATTGCCC  400

seq1  TGAAATAGATCTGCTAATTCCTCAAAGGGCTGGTGTGAAAACGAAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGATCTGCTAATTCCTCAAAGGGCTGGTGTGAAAACGAAATGGA  450

seq1  GATTTAGAGACCTTGTAACCAGACAAGTGTTGCTACCAGAAAACGCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGAGACCTTGTAACCAGACAAGTGTTGCTACCAGAAAACGCTCAT  500

seq1  CTTTGTTGTCTCCCACATTCAAGCTTTCAAGTGGCCTGAGCTCTCCGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTCTCCCACATTCAAGCTTTCAAGTGGCCTGAGCTCTCCGCTC  550

seq1  TGCAAAATCCATTTTGCTTCATTCACTTCCTTTATCAAAGTGGTGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATCCATTTTGCTTCATTCACTTCCTTTATCAAAGTGGTGAGCTC  600

seq1  ACTGCAGGGGCATACTTTTGGAATAGCATATTTCTTTGTAGTTACCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGGGCATACTTTTGGAATAGCATATTTCTTTGTAGTTACCATTT  650

seq1  TTTTTTGCTAGGCTAATAGACAAGTGCTCAAGCACTTCTACCCTGCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTAGGCTAATAGACAAGTGCTCAAGCACTTCTACCCTGCATAT  700

seq1  AAATACATTCAAATGTGTGTGTGAGCACACACACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTCAAATGTGTGTGTGAGCACACACACACACACACACACACAC  750

seq1  ACACACACACACACATACACACACACACACCCCACATATTGAGGTTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATACACACACACACACCCCACATATTGAGGTTTGGT  800

seq1  CTTTTGCTATGCTAAACACTGGTTGCTTCCAGAGATCCAAGTGGTGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTATGCTAAACACTGGTTGCTTCCAGAGATCCAAGTGGTGCTAT  850

seq1  GTGACTTTGGACCCCAAGTTATCCTGGATTGCTGAATAAAGATAGCAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTGGACCCCAAGTTATCCTGGATTGCTGAATAAAGATAGCAACA  900

seq1  GCCAATAGATGGGCAGAAGAGACATTGGCAGGGA-TTAGGGTTCCTGGTC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCAATAGATGGGCAGAAGAGACATTGGCAGGGATTTAGGGTTCCTGGTC  950

seq1  TAGGAGTCAGAGGAGAACCACATGGTGGAAAAAAAGAAGGTAAAG-AGAA  998
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TAGGAGTCAGAGGAGAACCACATGGTGGAAAAAAAGAA-GTAAAGAAGAA  999

seq1  GAGAAGACTCCATGGGATAAGACTCTTAAAATAATGGCCAT-GTGGGCTG  1047
      ||||||||| ||||||||||||||||||||||||| ||||| ||||||||
seq2  GAGAAGACT-CATGGGATAAGACTCTTAAAATAAT-GCCATGGTGGGCTG  1047

seq1  ACC-AATTGGAGTTAAGAGCACACAGATGAAACATGGCAAATTATATAAT  1096
      ||| ||| ||||| |  |||||||||||| |||||||| ||||||||| |
seq2  ACCAAATGGGAGTAAGAAGCACACAGATG-AACATGGC-AATTATATATT  1095

seq1  TGAATTATTAGC-TGGGAAATAG-ACATAATAGCATAGAGGTTACATA-T  1143
      |||||  ||||| ||| |||||| ||||||| |||||||||||||||| |
seq2  TGAATATTTAGCTTGGAAAATAGAACATAATGGCATAGAGGTTACATATT  1145

seq1  CTGCCCAGCTCTTTGCTGACTAAGGCTTACTATAAATATAAAGGTTGTGT  1193
      ||| ||||||||| ||||||| |||| ||| |||||| ||| ||||||||
seq2  CTG-CCAGCTCTTGGCTGACT-AGGC-TAC-ATAAAT-TAAGGGTTGTGT  1190

seq1  ATGT  1197
      ||||
seq2  ATGT  1194


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