BAC Information

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BAC

Clone NameB6Ng01-341K03
Chromosome17 (Build37)
Map Location 36,264,980 - 36,430,383
singlet/doubletdoublet
Overlap geneLOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2
Upstream geneApom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10
Downstream geneH2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341K03.bB6Ng01-341K03.g
ACCGA124960GA124961
length1,156854
definitionB6Ng01-341K03.b B6Ng01-341K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,429,227 - 36,430,383)(36,264,980 - 36,265,832)
sequence
gaattccagaatactgctataggttttcaggaagaattatttggggatct
aaataattagataataataataaataataataattaggggctggacagat
gtcccagtaataaagagcactgactgctcttccaggagactcgcattcaa
ttcctagcacctgcacatcaacctacaaccatctaattcaaaacacaggg
aatgtgaagccgttttctgatctccacaaccatcagataccatcatggtg
cttagacatatatacaggaggaaaaagtcacacacataataaaaatgaat
aatatttattaattaatggagaagggaagggaaaaaaaggtagaaacatt
gaaaataaccacaacaggagagattatggaaaatattctcccttaaggac
tcagccagatcaagggccaaagccatttttcagatactcctgtttagctg
gtctatcgtaatccagctgatgacactcaccatctctgctcagcctgtag
tagaagagcaagtccaagatctctattgcttcccacaatctgcatgcctg
aaacacaactcaagaatgaatgagacccagggctccaggagggcagcctc
aggagaaagggcatagaaataacacagctcataggagcctaaaaccaaca
tgcaatgggaccctgccctcctcctggcacctgagaaagttcactaggct
ggggggtgaacagggagcccagctctggacctggatgatataggaagcca
ggcaaggggagcctaaaggggaagcctggagttgctgggacaagcagggt
gaaagctaggcttcccatgtctgcagtgatgcacagcatccttgtggctt
cagaatgagattctttctctcagttccaatactcagatgccaccatttaa
tatctcagagttcagccagcatagctgccagcagcaagaggaggacttca
agtaacagagtcttccgcctaaatgatggtacaggtttagtccagatgat
ttccattcaacatacatttctgagcttctggaagaggctgattggcttct
cttacagtacacagtgggagatactgagaacctgaggggtcatgaaaaga
ttaattatttggggacaaacctccatagcctggcttctgaccacgaattc
agttct
gaattcctaggatttgtgtgaaagggcctaggttctccaggactctcatc
acctattgagaaagagactcctgttccagactgggtgggtctgagacatt
tggtgtcaccagagtcagatcccaatgaccccagtgtgtgcagagagcag
ggcctcagagaagccactgctccaaaggcctgcagactgcagggggctac
tgttggctattccagagatcttctctgtttccatcctgaaacagactctg
aactatcctgagagaagggaaatattgaggagagcccctctccccctctg
gatactgggtcaagaaaactagaagccttctctctatcctgaggcagaca
aaggcagtattctagctgcattctttttctcccccaatcagagaacaagg
gagctgagagagggttgttcctcaaactacatcacttacctgagtgttgc
tgagcttcctccaacaatctgtggagtgtctccacgcatgtgccctctag
gtaggccttgtattcctctgccactccagcctcctcccatttgtgttgag
tgatctgagccactgcatctgctgcggtccaggagctcaggtcctcgttc
agggtgatgtaatcgtggccatcataggcatgttgatagtgcccgtgtag
gaactgaccatctggtcccacgtagcatccgtgcatatcctggatagtgt
ggggacctggcccgggcatggacacagtcccgcccatgttcaggcacagt
cctcaaacctaaagcaaaactcagcacccacagcgggtcccatatccctt
cagtgagttcgtgaggggacgtgacctctgacactcggggggggggtggg
ggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36429227_36430383
seq2: B6Ng01-341K03.b_46_1201 (reverse)

seq1  AGAACTGAATCTGTGGTCAGGAAGCCAGGCTATGGAGGTTTGTCCCC-AA  49
      ||||||||||  ||||||| ||||||||||||||||||||||||||| ||
seq2  AGAACTGAATTCGTGGTCA-GAAGCCAGGCTATGGAGGTTTGTCCCCAAA  49

seq1  TAATTAATCTTTTCATGACCCCTCAGG-TCTCAGTATCTCCCACTGTGTA  98
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATTAATCTTTTCATGACCCCTCAGGTTCTCAGTATCTCCCACTGTGTA  99

seq1  CTGTAAGAGAAGCCAATCAGCCTCTTCCAGAAGCTCAGAAATGTATTGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTGTAAGAGAAGCCAATCAGCCTCTTCCAGAAGCTCAGAAATGTATGTTG  149

seq1  AATGGAAATCATTCTGGACTAAACCTGTACCATCATTTAGGCGGAAGACT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATCA-TCTGGACTAAACCTGTACCATCATTTAGGCGGAAGACT  198

seq1  CTGTTACCTGAAGTCCTCCTCTTGCTGCTGGCAGCTATGCTGGCCTGAAC  248
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGTTACTTGAAGTCCTCCTCTTGCTGCTGGCAGCTATGCTGG-CTGAAC  247

seq1  TCTGAGATATTAAATGGTGGCATCTGAGTATTGGAACTGAGAGAAAGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATATTAAATGGTGGCATCTGAGTATTGGAACTGAGAGAAAGAAT  297

seq1  CTCATTCTGAAGCCACAAGGATGCTGTGCATCACTGCAGACATGGGAAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGAAGCCACAAGGATGCTGTGCATCACTGCAGACATGGGAAGC  347

seq1  CTAGCTTTGGCCCTGCTTGTCCCAGCAACTCCAGGCTTCCCCTTTAGGCT  398
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCACCCTGCTTGTCCCAGCAACTCCAGGCTTCCCCTTTAGGCT  397

seq1  CCCCTTGCCTGGCTTCCTATATCATCCAGGTCCAGAGCTGGGCTCCCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCCTGGCTTCCTATATCATCCAGGTCCAGAGCTGGGCTCCCTGT  447

seq1  TCACCCCCCAGCCTAGTGAACTTTCTCAGGTGCCAGGAGGAGGGCAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCAGCCTAGTGAACTTTCTCAGGTGCCAGGAGGAGGGCAGGGT  497

seq1  CCCATTGCATGTTGGTTTTAGGCTCCTATGAGCTGTGTTATTTCTATGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCATGTTGGTTTTAGGCTCCTATGAGCTGTGTTATTTCTATGCC  547

seq1  CTTTCTCCTGAGGCTGCCCTCCTGGAGCCCTGGGTCTCATTCATTCTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTGAGGCTGCCCTCCTGGAGCCCTGGGTCTCATTCATTCTTGA  597

seq1  GTTGTGTTTCAGGCATGCAGATTGTGGGAAGCAATAGAGATCTTGGACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTCAGGCATGCAGATTGTGGGAAGCAATAGAGATCTTGGACTT  647

seq1  GCTCTTCTACTACAGGCTGAGCAGAGATGGTGAGTGTCATCAGCTGGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTACTACAGGCTGAGCAGAGATGGTGAGTGTCATCAGCTGGATT  697

seq1  ACGATAGACCAGCTAAACAGGAGTATCTGAAAAATGGCTTTGGCCCTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAGACCAGCTAAACAGGAGTATCTGAAAAATGGCTTTGGCCCTTGA  747

seq1  TCTGGCTGAGTCCTTAAGGGAGAATATTTTCCATAATCTCTCCTGTTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGAGTCCTTAAGGGAGAATATTTTCCATAATCTCTCCTGTTGTG  797

seq1  GTTATTTTCAATGTTTCTACCTTTTTTTCCCTTCCCTTCTCCATTAATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTCAATGTTTCTACCTTTTTTTCCCTTCCCTTCTCCATTAATTA  847

seq1  ATAAATATTATTCATTTTTATTATGTGTGTGACTTTTTCCTCCTGTATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTATTCATTTTTATTATGTGTGTGACTTTTTCCTCCTGTATAT  897

seq1  ATGTCTAAGCACCATGATGGTATCTGATGGTTGTGGAGATCAGAAAACGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAGCACCATGATGGTATCTGATGGTTGTGGAGATCAGAAAACGG  947

seq1  CTTCACATTCCCTGTGTTTTGAATTAGATGGTTGTAGGTTGATGTGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTCCCTGTGTTTTGAATTAGATGGTTGTAGGTTGATGTGCAGG  997

seq1  TGCTAGGAATTGAATGCGAGTCTCCTGGAAGAGCAGTCAGTGCTCTTTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAATTGAATGCGAGTCTCCTGGAAGAGCAGTCAGTGCTCTTTAT  1047

seq1  TACTGGGACATCTGTCCAGCCCCTAATTATTATTATTTATTATTATTATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGACATCTGTCCAGCCCCTAATTATTATTATTTATTATTATTATC  1097

seq1  TAATTATTTAGATCCCCAAATAATTCTTCCTGAAAACCTATAGCAGTATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTAGATCCCCAAATAATTCTTCCTGAAAACCTATAGCAGTATT  1147

seq1  CTGGAATTC  1157
      |||||||||
seq2  CTGGAATTC  1156

seq1: chr17_36264980_36265832
seq2: B6Ng01-341K03.g_68_920

seq1  GAATTCCTAGGATTTGTGTGAAAGGGCCTAGGTTCTCCAGGACTCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGATTTGTGTGAAAGGGCCTAGGTTCTCCAGGACTCTCATC  50

seq1  ACCTATTGAGAAAGAGACTCCTGTTCCAGACTGGGTGGGTCTGAGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGAGAAAGAGACTCCTGTTCCAGACTGGGTGGGTCTGAGACATT  100

seq1  TGGTGTCACCAGAGTCAGATCCCAATGACCCCAGTGTGTGCAGAGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCACCAGAGTCAGATCCCAATGACCCCAGTGTGTGCAGAGAGCAG  150

seq1  GGCCTCAGAGAAGCCACTGCTCCAAAGGCCTGCAGACTGCAGGGGGCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGAGAAGCCACTGCTCCAAAGGCCTGCAGACTGCAGGGGGCTAC  200

seq1  TGTTGGCTATTCCAGAGATCTTCTCTGTTTCCATCCTGAAACAGACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTATTCCAGAGATCTTCTCTGTTTCCATCCTGAAACAGACTCTG  250

seq1  AACTATCCTGAGAGAAGGGAAATATTGAGGAGAGCCCCTCTCCCCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCTGAGAGAAGGGAAATATTGAGGAGAGCCCCTCTCCCCCTCTG  300

seq1  GATACTGGGTCAAGAAAACTAGAAGCCTTCTCTCTATCCTGAGGCAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGGTCAAGAAAACTAGAAGCCTTCTCTCTATCCTGAGGCAGACA  350

seq1  AAGGCAGTATTCTAGCTGCATTCTTTTTCTCCCCCAATCAGAGAACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTATTCTAGCTGCATTCTTTTTCTCCCCCAATCAGAGAACAAGG  400

seq1  GAGCTGAGAGAGGGTTGTTCCTCAAACTACATCACTTACCTGAGTGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGAGAGGGTTGTTCCTCAAACTACATCACTTACCTGAGTGTTGC  450

seq1  TGAGCTTCCTCCAACAATCTGTGGAGTGTCTCCACGCATGTGCCCTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCTCCAACAATCTGTGGAGTGTCTCCACGCATGTGCCCTCTAG  500

seq1  GTAGGCCTTGTATTCCTCTGCCACTCCAGCCTCCTCCCATTTGTGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTTGTATTCCTCTGCCACTCCAGCCTCCTCCCATTTGTGTTGAG  550

seq1  TGATCTGAGCCACTGCATCTGCTGCGGTCCAGGAGCTCAGGTCCTCGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGAGCCACTGCATCTGCTGCGGTCCAGGAGCTCAGGTCCTCGTTC  600

seq1  AGGGTGATGTAATCGTGGCCATCATAGGCATGTTGATAGTGCCCGTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATGTAATCGTGGCCATCATAGGCATGTTGATAGTGCCCGTGTAG  650

seq1  GAACTGACCATCTGGTCCCACGTAGCATCCGTGCATATCCTGGATAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGACCATCTGGTCCCACGTAGCATCCGTGCATATCCTGGATAGTGT  700

seq1  GGGGACCTGGCCCGGGCATGGACACAGTCCCGCCCATGTTCAGGCACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCTGGCCCGGGCATGGACACAGTCCCGCCCATGTTCAGGCACAGT  750

seq1  CCTCAAACCTAAAGCAAAACTCAGGCACCCACAGCGGGTCCCATATCCCT  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTCAAACCTAAAGCAAAACTCA-GCACCCACAGCGGGTCCCATATCCCT  799

seq1  TCAGTGAGTTCGTGAGGGGACGTGACCTCTGACACTC-GGGGGGGGGTGG  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGTGAGTTCGTGAGGGGACGTGACCTCTGACACTCGGGGGGGGGGTGG  849

seq1  GGGT  853
      ||||
seq2  GGGT  853