BAC Information

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BAC

Clone NameB6Ng01-342E06
Chromosome17 (Build37)
Map Location 55,477,566 - 55,478,216
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342E06.bB6Ng01-342E06.g
ACCGA125403GA125404
length1,0451,029
definitionB6Ng01-342E06.b B6Ng01-342E06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttggggtcacttaagtatactgtcttatcatctgcaaatagtga
tattttgacttcttcctttccagtttgtattcctttgacccccttttgtt
gtctaattgctctagctagaacttcaagtactatattgaaaagataggga
aagagtggacgccttgtctaatccctgagtttggtggaattgcttcaagt
ttctctccatttagtttgatgctggctactggtttgctgtatattgcttt
tactatgtttaggtatgggccttgaattcctgatctttccaaaactttta
acatgaaggggtgttgaattttgtcaaatgctttttttcagcaacttaat
gagatgcgcatgtggtttttttctttgtgtttatttatgtagtgggttac
attgatggatttccatatattgaaccatccctcattcctaggatgaagat
tatttgatcttggtgaaggattgttttgatgtgttcttggactcaggttt
gacaacccagatgtccctcaacagaggaatgaatacagaaaattaggtac
atttacacaatggaatactactcagctattaaaaacaatgacttcatgaa
attcgcaggcaaatggatggaacttgaaaatatcatactgagtgaggtaa
ccagccacagaagaacatacgtggtatgcacccactggtaagtggatatt
aatccaaaagttcagaatatacaagatacaattcacagaccatatgaagc
taaagaagtaggaagaccaaagtgtggatgctcagtgcttcttagaaggg
gaaacaaaatactcacaggaggaaaaacatggaagagagactgaaggaaa
ggccatccatagactgcccacctaggaattcatcccatatatagtcaccc
aaacccagatgctattgtggatgctgggaaggtgcttgctgacaggagcc
tgatttggctgtctcctgaaaggcttgccaaagtctgacaatacagagat
ggatgtttgcagctaaccattggactgagctctggggttccccat
gaattccaggctcaatacctcccaactatatgctgggattttgtctggtt
tcagcttgtgatggtcttgtatgtactgcccaaagcactgtaagtttaga
tgttctctgctgggtctggaaaatacagtttccttgtatttagtagtatt
gacttgagattcatacagattgttatcaatagttcatttcttttcatcac
tgagtaatattctacattgtggatacactattacttgtttaccctttcac
taaactggattttaatttagaacaattgctaccaaagcttctattaacac
tatatttagttttattttgtgcatttaaaaatagttacatttttgggtta
aatgtctaggaaatgtatcactggtgcatatggtgaattgatgtttggaa
gaaattatctttttcaattccagaatggctttccaattttgcattttcat
tagtaatggatgaacaatcccattcctctgtattctcgcacttagtgttg
ccctcttgttaatattattttgttttagtaagtatagagtggaaacttgg
tggtatttatttcatggctaccaacacaaagcctccttttatgtatttat
atgtttactgtctcctcactgtattcaaggagatgcctctctgtatcttt
gttcccttttatatattgtctgttttttgtttttgttttatttttgctct
tgtaaagatttgcttttatgtgtatgtttttcatggctgaccattttcag
tgctgtacaactaattgatgtactatttcctagagaaaacttccttatcc
actcccagttttcctctgttacctatagatttttgatatagcattaagac
ctcatggaattttactcatgtactctgacatttccattgatcttaatttg
ttcagctcagtttgggcagttcatgttgatgagagtttatggatataaaa
ttcttgacattagtggggacgcaatctctcagcaacctccctgatcctct
ggccttacaatctttcatggccttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55477566_55478216
seq2: B6Ng01-342E06.g_67_717 (reverse)

seq1  CAAAGATACAGAGAGGCATCTCCTTGAATACAGTGAGGAGACAGTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATACAGAGAGGCATCTCCTTGAATACAGTGAGGAGACAGTAAACA  50

seq1  TATAAATACATAAAAGGAGGCTTTGTGTTGGTAGCCATGAAATAAATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATACATAAAAGGAGGCTTTGTGTTGGTAGCCATGAAATAAATACC  100

seq1  ACCAAGTTTCCACTCTATACTTACTAAAACAAAATAATATTAACAAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTTCCACTCTATACTTACTAAAACAAAATAATATTAACAAGAGG  150

seq1  GCAACACTAAGTGCGAGAATACAGAGGAATGGGATTGTTCATCCATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACTAAGTGCGAGAATACAGAGGAATGGGATTGTTCATCCATTACT  200

seq1  AATGAAAATGCAAAATTGGAAAGCCATTCTGGAATTGAAAAAGATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAATGCAAAATTGGAAAGCCATTCTGGAATTGAAAAAGATAATTT  250

seq1  CTTCCAAACATCAATTCACCATATGCACCAGTGATACATTTCCTAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAACATCAATTCACCATATGCACCAGTGATACATTTCCTAGACAT  300

seq1  TTAACCCAAAAATGTAACTATTTTTAAATGCACAAAATAAAACTAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCAAAAATGTAACTATTTTTAAATGCACAAAATAAAACTAAATAT  350

seq1  AGTGTTAATAGAAGCTTTGGTAGCAATTGTTCTAAATTAAAATCCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAATAGAAGCTTTGGTAGCAATTGTTCTAAATTAAAATCCAGTTT  400

seq1  AGTGAAAGGGTAAACAAGTAATAGTGTATCCACAATGTAGAATATTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAGGGTAAACAAGTAATAGTGTATCCACAATGTAGAATATTACTC  450

seq1  AGTGATGAAAAGAAATGAACTATTGATAACAATCTGTATGAATCTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAAAAGAAATGAACTATTGATAACAATCTGTATGAATCTCAAGT  500

seq1  CAATACTACTAAATACAAGGAAACTGTATTTTCCAGACCCAGCAGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTACTAAATACAAGGAAACTGTATTTTCCAGACCCAGCAGAGAAC  550

seq1  ATCTAAACTTACAGTGCTTTGGGCAGTACATACAAGACCATCACAAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACTTACAGTGCTTTGGGCAGTACATACAAGACCATCACAAGCTG  600

seq1  AAACCAGACAAAATCCCAGCATATAGTTGGGAGGTATTGAGCCTGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACAAAATCCCAGCATATAGTTGGGAGGTATTGAGCCTGGAATT  650

seq1  C  651
      |
seq2  C  651