BAC Information

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BAC

Clone NameB6Ng01-342M18
Chromosome17 (Build37)
Map Location 23,607,282 - 23,608,470
singlet/doubletsinglet
Overlap geneEG619788
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775
Downstream geneOlfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342M18.bB6Ng01-342M18.g
ACCGA125765GA125766
length1,1251,172
definitionB6Ng01-342M18.b B6Ng01-342M18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttacatctaagccccattttttaatggggttatttgatt
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggataggaaaagatactttcccaatctgtttgtggct
tttatgtcttattgacagtgtcttttgccttgcagaagctttgcagtttc
atgacgtcccatttttcagtcctcgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcctcgaggcttttcccca
ctttctcctctataagtttcagtgtctctgattttatgtgaagttccttg
acctacttagatttgaccttagtacaaggagataggaatggatcaatgcg
cattcttctccatgataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttatctccctcatcgaagatcaag
tgaccataggtgtgtgggttcacttctaggtcttcaattctattccattg
gtctacttgtctgtctctataccagtaatatgcagtttttatcacaattg
ctctgtagtaaatctttaggtcatcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctctttataattaattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagacattt
tttcaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcctttttctttcttcagagacttgaatttcttatcagaaagat
ctttaacttccttagttagagtcacgccaagatcttttatattatttgtg
actatgagaaggtgttgttcctatttctttctcagctgttatcttttgtg
taagagaaaggcatgactgtttggcttattttatatccagcctactcacc
gagctgttatcagggttaaggagtcctggggcatttcagggtcactataa
taccatctcatgatcatctggagat
gaattccaaatagttgggaaacaagtcaacttttactcaatttttcaata
ttgatatctgtcctcataaaatgcactaggtaaaaatctgctaaatctgt
tggtgtatatgaaattagtttcttaatgtcatacacaattataatataat
tatggaaggttaaataaaactccagttagcagcatatgtctacttttcat
taggtgccaacttcggtgtgcagtgctgaatgtggtcctggatctagaaa
attcaggatggacggaatggcagcatgctgttttcattgcaaaccctgtc
ctgaaaatgaaatttctaacgagacaagtgagtatttcctgctagaataa
gttcttcaaaaaaaattatcatcttgctacagtattggaacaatgaagta
gtttaaaatgaagcttaaaaacaaaatacatctctgtcctaagttagttg
ttataggaatacaatgatttaaaatgtgcttattaagaaaaaaagtagaa
attgtcctacatctttaatttcttgaaaattcatagtaaatggcatactc
tcaaatagttttgataataaaatttaagtgtactctacacaagatatttt
ctagtaattaatactttctaaaatatatatgtagatcatgaatatttaaa
taatgtatttattttgacttgatatatatggttttacctaaggccatgct
taccttgcatgtatagaagaacatggaagacaataaaagacaaaataagg
catgtgggtatggataaacaaattccagtcctctgtaagatgaaagaaca
tggagaataataacttgtaaaattataagatattcaaatgagtatattct
tcttttagacatattttgagtactaaaagaatactctttttcaaaagttc
aatgtattttaaatttagaaaactgaggatcactctggactcatgatatg
aaaatatgaatggtcctcaagtcattactactattgtatcaagcccattt
agatttctcctcatagaacacattaatattgagttctttatttgatgatg
tgtataataaacacctgtttcttaatttaatataaaaataattggttttt
caaatatttttattacattttctcaattacatttcatgggattccgaatg
ttccttccatacccttcccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23607282_23608470
seq2: B6Ng01-342M18.g_67_1238 (reverse)

seq1  GGGGGGAAGGGTATGGA--GGACATTTGGGATACCATTGGAAATGTAATT  48
      |||||||||||||||||  | ||||| || || ||||  |||||||||||
seq2  GGGGGGAAGGGTATGGAAGGAACATTCGGAATCCCAT--GAAATGTAATT  48

seq1  GAGGAAAATATGTAATAAAAATATTTTAAAAAAACAAATTAATTTTAATA  98
      |||   || |||||||||||||||||   |||||| |||| ||||| |||
seq2  GAG---AAAATGTAATAAAAATATTT--GAAAAACCAATT-ATTTTTATA  92

seq1  ATAAAATATAAAGAAAAACAAGTTGTTTAATAAATACACATACAAAACCA  148
       |||   || ||||||    || |||||| |  ||||||||     | ||
seq2  TTAA---ATTAAGAAA---CAGGTGTTTATT--ATACACAT----CATCA  130

seq1  AAT-AAGAACTCAATATTAATGTGTTCTATTGAGGAGAAATCTAAATTGG  197
      ||| ||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  AATAAAGAACTCAATATTAATGTGTTCTA-TGAGGAGAAATCTAAATGGG  179

seq1  CTTGATAC-ATAGTAGTAATGACTTGAGGACCATTCATATTTTCATATCA  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATACAATAGTAGTAATGACTTGAGGACCATTCATATTTTCATATCA  229

seq1  TGAGTCCAGAGTGATCCTCAGTTTTCTAAATTTAAAATACATTGAACTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCAGAGTGATCCTCAGTTTTCTAAATTTAAAATACATTGAACTTT  279

seq1  TGAAAAAGAGTATTC-TTTAGTACTCAAAATATTGTCTAAAAGAAGAATA  345
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TGAAAAAGAGTATTCTTTTAGTACTCAAAATA-TGTCTAAAAGAAGAATA  328

seq1  TACTCATTTGAATATCTTATAATTTTACAAGTTATTATTCTCCATGTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTTGAATATCTTATAATTTTACAAGTTATTATTCTCCATGTTCT  378

seq1  TTCATCTTACAGAGGACTGGAATTTGTTTATCCATACCCACATGCCTTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTACAGAGGACTGGAATTTGTTTATCCATACCCACATGCCTTAT  428

seq1  TTTGTCTTTTATTGTCTTCCATGTTCTTCTATACATGCAAGGTAAGCATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTATTGTCTTCCATGTTCTTCTATACATGCAAGGTAAGCATG  478

seq1  GCCTTAGGTAAAACCATATATATCAAGTCAAAATAAATACATTATTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGTAAAACCATATATATCAAGTCAAAATAAATACATTATTTAAA  528

seq1  TATTCATGATCTACATATATATTTTAGAAAGTATTAATTACTAGAAAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGATCTACATATATATTTTAGAAAGTATTAATTACTAGAAAATA  578

seq1  TCTTGTGTAGAGTACACTTAAATTTTATTATCAAAACTATTTGAGAGTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTAGAGTACACTTAAATTTTATTATCAAAACTATTTGAGAGTAT  628

seq1  GCCATTTACTATGAATTTTCAAGAAATTAAAGATGTAGGACAATTTCTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTACTATGAATTTTCAAGAAATTAAAGATGTAGGACAATTTCTAC  678

seq1  TTTTTTTCTTAATAAGCACATTTTAAATCATTGTATTCCTATAACAACTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTAATAAGCACATTTTAAATCATTGTATTCCTATAACAACTA  728

seq1  ACTTAGGACAGAGATGTATTTTGTTTTTAAGCTTCATTTTAAACTACTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACAGAGATGTATTTTGTTTTTAAGCTTCATTTTAAACTACTTC  778

seq1  ATTGTTCCAATACTGTAGCAAGATGATAATTTTTTTTGAAGAACTTATTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCAATACTGTAGCAAGATGATAATTTTTTTTGAAGAACTTATTC  828

seq1  TAGCAGGAAATACTCACTTGTCTCGTTAGAAATTTCATTTTCAGGACAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAAATACTCACTTGTCTCGTTAGAAATTTCATTTTCAGGACAGG  878

seq1  GTTTGCAATGAAAACAGCATGCTGCCATTCCGTCCATCCTGAATTTTCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAATGAAAACAGCATGCTGCCATTCCGTCCATCCTGAATTTTCTA  928

seq1  GATCCAGGACCACATTCAGCACTGCACACCGAAGTTGGCACCTAATGAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGACCACATTCAGCACTGCACACCGAAGTTGGCACCTAATGAAA  978

seq1  AGTAGACATATGCTGCTAACTGGAGTTTTATTTAACCTTCCATAATTATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATATGCTGCTAACTGGAGTTTTATTTAACCTTCCATAATTATA  1028

seq1  TTATAATTGTGTATGACATTAAGAAACTAATTTCATATACACCAACAGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTGTGTATGACATTAAGAAACTAATTTCATATACACCAACAGAT  1078

seq1  TTAGCAGATTTTTACCTAGTGCATTTTATGAGGACAGATATCAATATTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGATTTTTACCTAGTGCATTTTATGAGGACAGATATCAATATTGA  1128

seq1  AAAATTGAGTAAAAGTTGACTTGTTTCCCAACTATTTGGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAGTAAAAGTTGACTTGTTTCCCAACTATTTGGAATTC  1172