BAC Information

Click to search

BAC

Clone NameB6Ng01-342N14
Chromosome17 (Build37)
Map Location 10,255,962 - 10,256,956
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667165, EG667170, LOC666143, 4932702K14Rik
Downstream geneQk, LOC675815, Pacrg, Park2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342N14.g
ACCGA125800
length1,048
definitionB6Ng01-342N14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttcggcccacatttttatctacccatgtgaggtcacctcagt
cccactgccttgagtacccctgactttcagatttggggattaaatcaaag
acctgggatgaaaagtaaaggaattcatgttggtggggtcaggaagagga
gatctgatctgttattgggtgagggaaaatgactgaagccctgagggcca
ttgtatagaatggaaatgggtcctgggggcgggcgatgctccgaaatgca
cctgaaaacttttaggtgatacactctcatagcttcttcggggaaacctt
atatactgggttattctgggaaacagggaactttgacagcccacctctat
tggcttgcctgaccttgtggtagggatggggttgtggtcctgtattcggg
actatgaccggatattgtgcctgaagattataatgtccttcgacaatccc
gaactggttacttactgatcgggaggtcccatagcccgacactattactg
aagatcctgaattttaaatagggaagcattatcatggacaccttctggat
ttccccattacttgacaaactgaactatgctagatctttgatccctactg
attgacagaagcacataactcctgttgttgacataactgaatgctcaaat
aatatgaggaaatttggaaggaccacatgcctatacttatccctgaccac
ctttctatttctgatacttttaccactcattctgtttattttgctactac
ccatgagagccccaaagatacttttgaaaaagtactgcgggatgtgcata
cgcaagggcagaggaaagcaagtctcacagactgcaggcactatatcctg
agagacctgtctcctggtctgaccttgtaaggtctgttgtgatgtctctg
gtacaccatccagcaagtaccccccctctcccctcccctgcaaaggtccc
gtgtggagctgctgactaagaaagacttggaaattagcgtcacctttata
cctatgtgtggtgtggattggtcatgagatcagaatttttcaacacca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_10255962_10256956
seq2: B6Ng01-342N14.g_122_1114 (reverse)

seq1  TGGT-TTGAAAAATTCTGATCTCCTGACCCAAATCCACACCACACCATAG  49
      |||| |||||||||||||||||| |||||  ||||||||||||| |||||
seq2  TGGTGTTGAAAAATTCTGATCTCATGACC--AATCCACACCACA-CATAG  47

seq1  GTATAAAGGTGACGCTAAATTCCAAGTCTTTCTTAGTCAGCAGCTCCACA  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTATAAAGGTGACGCTAATTTCCAAGTCTTTCTTAGTCAGCAGCTCCACA  97

seq1  CGGGGACCTTTGCAGGGGAGGGGAGA-GGGGGGTACTTGCTGGAATGGTG  148
      | |||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  C-GGGACCTTTGCAGGGGAGGGGAGAGGGGGGGTACTTGCTGG-ATGGTG  145

seq1  TAACCAGAGACATCACAACAGACCCTACAAGGTCAGACCAGGAGACAAGT  198
      | |||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  T-ACCAGAGACATCACAACAGACCTTACAAGGTCAGACCAGGAGACAGGT  194

seq1  CTCCCAGGATATAGTCCTCTGCTCTCTGTAACTTCCTGCTTTCCTCTGAC  248
      ||| ||||||||||| | ||||  ||||| |   | |||||||||||| |
seq2  CTCTCAGGATATAGTGC-CTGCAGTCTGTGA-GACTTGCTTTCCTCTGCC  242

seq1  CTTGCTTCTGAACATACCACTTTATTCTTTCAAAATTATCTTT---CCTC  295
      ||||| | || |||| || |  || | |||||||| |||||||    |||
seq2  CTTGCGTATGCACATCCCGCAGTACTTTTTCAAAAGTATCTTTGGGGCTC  292

seq1  TCTGTGGGTTGTAACCATATAAATAGAATGA-TTCTAAAATTAACATAAA  344
      ||  ||||| ||| | | ||||| ||||||| |  ||||| || || |||
seq2  TC-ATGGGTAGTAGCAAAATAAACAGAATGAGTGGTAAAAGTATCAGAAA  341

seq1  TAGAAA-GACTTCAGGTATAAGAATAGGCATGT-AAATAACCAAAATGCC  392
      |||||| |   ||||| ||||| ||||||||||       ||||| | ||
seq2  TAGAAAGGTGGTCAGGGATAAGTATAGGCATGTGGTCCTTCCAAATTTCC  391

seq1  AGCTATAATTTGAGCAAACAGTGCTGTCAACAAATATATATCTGTCCTAC  442
         ||| |||||||||  ||||  |||||||||    |  | ||| || |
seq2  TCATATTATTTGAGCATTCAGTTATGTCAACAACAGGAGTTATGTGCTTC  441

seq1  TTTTAACCAGTAGGTATCCTAGA-CTATACAAGTTCAGTATGTCAAGTAA  491
      | | || ||||||| |||  ||| |||    |||||||| ||||||||||
seq2  TGTCAATCAGTAGGGATCAAAGATCTAGCATAGTTCAGTTTGTCAAGTAA  491

seq1  TGGGGAAAGTGATTAGTTATCTTTTATAATGCTTCCCAATTTAAAATCCA  541
      ||||||||   |  || | ||  | |||||||||||| ||||||||| ||
seq2  TGGGGAAATCCAGAAGGTGTCCATGATAATGCTTCCCTATTTAAAATTCA  541

seq1  GGCTCTTAATTAACGTTCTGGTTATATCCTACTTCCTGATCATTAATAAA  591
      || |||| | |||   | | |   |||   || ||| ||||| |||  ||
seq2  GGATCTTCAGTAATAGTGTCGGGCTATGGGACCTCCCGATCAGTAAGTAA  591

seq1  TGTGTTCAGAACTATTGAATTTAATAATAATCTGTATGCAAAATATCCAG  641
         |||| | | | | |||    || |||||||  | ||| ||||||| |
seq2  CCAGTTCGGGATTGTCGAAGGACATTATAATCTTCAGGCACAATATCCGG  641

seq1  TCTTCTTCCCCTAGACAGGGCCCTGTTCTCTTTGCTACCACAAGCATAGT  691
      || |  ||||  | ||||| ||     | | |  ||||||||||   || 
seq2  TCATAGTCCCGAATACAGGACCACAACCCCATCCCTACCACAAGGTCAGG  691

seq1  CAAGCCAATA-AGCTATTTTTGTCATTTAATTT--TAAATTCCCAGAATA  738
      |||||||||| || |     |||||   || ||      |||||||||||
seq2  CAAGCCAATAGAGGT-GGGCTGTCA---AAGTTCCCTGTTTCCCAGAATA  737

seq1  ACCCAGTCTATAACACTACCCTGAAGCTACAATGTATTGGGATCATCTAA  788
      ||||||| |||||   | ||| ||||   | |||     | |||| ||||
seq2  ACCCAGTATATAAGGTTTCCCCGAAGAAGCTATGAGAGTGTATCACCTAA  787

seq1  AGCTCTT------CATTTATGA--ATCCTGTGGCCAGGAGTACCCAGGAG  830
      |  | ||      |||||  ||  |||     |||    |  ||||||| 
seq2  AAGTTTTCAGGTGCATTTCGGAGCATC-----GCC---CGCCCCCAGGAC  829

seq1  CCAGTT--ATTAATTATACAATAGCTGGCCCATCGTTGGAGCAGAGGGAC  878
      ||| ||  |||   |||||||    |||||| ||   |   ||    | |
seq2  CCATTTCCATT--CTATACAA----TGGCCC-TCAGGGCTTCA----GTC  868

seq1  AGTT--GAGCATCTCTTCAGAGCTCTGAACTCTCTCT-------CTCATA  919
      | ||     || |   | | || || || ||| ||||       | ||  
seq2  ATTTTCCCTCACCCAATAACAGATCAGATCTC-CTCTTCCTGACCCCACC  917

seq1  GTCAAGAATTCCTGTCTTAGTCTGACAAAGCATGAGAGGAAATGAAGAAA  969
        || |||||||| |  |  ||   | | |  |  ||   |||    |||
seq2  AACATGAATTCCTTTACTTTTCATCCCAGGTCTTTGATTTAATCCCCAAA  967

seq1  TCCTAAAGTCAGGGGTACCTAAGGCA  995
      ||  ||||||||||||||  ||||||
seq2  TCTGAAAGTCAGGGGTACTCAAGGCA  993