BAC Information

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BAC

Clone NameB6Ng01-343A10
Chromosome17 (Build37)
Map Location 89,652,404 - 89,653,580
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
Downstream geneLOC100043904, LOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343A10.bB6Ng01-343A10.g
ACCGA125921GA125922
length1,2111,168
definitionB6Ng01-343A10.b B6Ng01-343A10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcctattagtacactatgacaatagaccaaccttggcttcccc
ctcgctgtgttctctaccaaatgaattcagaaaagatacacagactgatt
ggctgaggtcattacagagggaagggaagaaaatctgaagaatgcaagtg
gtccatagcaagaaaagtcttgcagtgaagataattctcacagtgtgaga
cttaccctgagtagggagaatattgtggcaacatacatatcattttctgt
tctttaaaatcttcctgtaggtatgtgcatgtatgcatgcaaacatatga
agatacacatacaaatacacttgctatatggcacgtgtatggggtcagag
aacaccctcaaatgttggtctatgcatgcccatgagcttctcaacctcaa
atcctactgcacaagcccattaccacatctggtatcaatgcggatcctta
tgcttgctcagcaagcactttaaccactgaaccatgtccaaatccctagg
ttttatattgttttcttctcttttttattagatattttcttcatttttat
ttcatatacaatcccgaatgtcccctatacccttgccctatccagctccc
cagcccacccactcctgctccctggccctggcattctcttgtattagggc
atataaagtttgcaagaccaaggggcctctcttcccactgatggccaagt
aggccatcttctgctaaatatgcagctagagacatgagctctgggggtac
tggttagttcatattgttgttcacctatagggttgcagactccttcagct
ccttagctactttctctatttcttccattgggagccctgtgttccatcta
atagatgactgtgagcatccacttctgtatttgccaggcattggtatagc
ctcacaagagagagatatgttaggtttctgtcagcaaaatctttctggca
tactcaatagtgtctgggtttggtgtgtatattgggatggatccccagtg
gtgcagtgtctggatggtccttcctttattcctcagtctgaatttaagtc
ttctttgaggtctggatagaactcttgcactaaaccctctcggttctatg
cttttatgtgtgggacagcctaatgaatggcctttatttcctttagggta
atggaccgtttacatgttatctgatccgtaattactttgggtcaccgtga
gcatcgtagct
gaattccatccatttgcctaagaatttcatgaagtcatcatttttaatac
ctgagtagtaaatgtcccacattttctgtatgcattcatctgttgaggga
catctgggttgtttccagctttaaaaagggacatgatatttcaattttat
ctaaagaaggaagaagtcaaatgacctgtaccaatccacacagaaaagca
agatggtttcctccttttctgtcataggaaggccactgagaacttactag
gaattctgagggaagattggtaataaagttgtagtagcatgtagaagact
ggtttagtggaaaaccctcagtttctttgacctcagtgtgtatttctttt
taattgacctgatcagtcacatgacagcatccacttgtaagtagtcttag
gacaggcagttatatctcaaattgcaaagcctcaaaagagatggcacagt
gcatcctagcatgcctggaattatttggcctttaataatgttcattaaat
tgaaaatgtgggttcgttctttagaaagcaagaagtaaaggactggctaa
tgtatgcatacaagcgtcaaaaagtaagacaagaaaaataacaattatga
tcagattaattcattaatcctatgattttattcaagtatacagaagtata
cttgccttgagagtgatgggtataagcactcaggggtgtggacaactggt
gaatgcatttggaaatggcaaggttgcatatttggaatccgaaacagttc
tataactgagcaaaggcaaggacaatatttggatcaggaagcaatgaaat
tgaacatatgtgctttcgcttctgtatctcaatgaacttgggatacaaat
ctgggcagatcaagaagtaaaaaattacttataagctattctctgtaaac
tgttgtgactaggttaactcaattcttcagtcaaaatcttattcctataa
aggtttgagtgacagtttaaaatccagaatctcttggtttcatatattat
gggattgagtattcaccagtatattgtcttcatatgaataagtggcactt
tgcacttacttcataaaattattgtagaatactagacatcatgtgccatg
agcccctgtgttggtacttcaggaatatattgtccactttccagcaatag
tgagcctagtttacatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89652404_89653580
seq2: B6Ng01-343A10.g_63_1230

seq1  GAATTCCATCCATTTGCCTAAGAATTTCATGAAGTCATCATTTTTAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCATTTGCCTAAGAATTTCATGAAGTCATCATTTTTAATAC  50

seq1  CTGAGTAGTAAATGTCCCACATTTTCTGTATGCATTCATCTGTTGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAGTAAATGTCCCACATTTTCTGTATGCATTCATCTGTTGAGGGA  100

seq1  CATCTGGGTTGTTTCCAGCTTTAAAAAGGGACATGATATTTCAATTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGTTGTTTCCAGCTTTAAAAAGGGACATGATATTTCAATTTTAT  150

seq1  CTAAAGAAGGAAGAAGTCAAATGACCTGTACCAATCCACACAGAAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGGAAGAAGTCAAATGACCTGTACCAATCCACACAGAAAAGCA  200

seq1  AGATGGTTTCCTCCTTTTCTGTCATAGGAAGGCCACTGAGAACTTACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTTCCTCCTTTTCTGTCATAGGAAGGCCACTGAGAACTTACTAG  250

seq1  GAATTCTGAGGGAAGATTGGTAATAAAGTTGTAGTAGCATGTAGAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGGAAGATTGGTAATAAAGTTGTAGTAGCATGTAGAAGACT  300

seq1  GGTTTAGTGGAAAACCCTCAGTTTCTTTGACCTCAGTGTGTATTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTGGAAAACCCTCAGTTTCTTTGACCTCAGTGTGTATTTCTTTT  350

seq1  TAATTGACCTGATCAGTCACATGACAGCATCCACTTGTAAGTAGTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACCTGATCAGTCACATGACAGCATCCACTTGTAAGTAGTCTTAG  400

seq1  GACAGGCAGTTATATCTCAAATTGCAAAGCCTCAAAAGAGATGGCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGTTATATCTCAAATTGCAAAGCCTCAAAAGAGATGGCACAGT  450

seq1  GCATCCTAGCATGCCTGGAATTATTTGGCCTTTAATAATGTTCATTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTAGCATGCCTGGAATTATTTGGCCTTTAATAATGTTCATTAAAT  500

seq1  TGAAAATGTGGGTTCGTTCTTTAGAAAGCAAGAAGTAAAGGACTGGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTGGGTTCGTTCTTTAGAAAGCAAGAAGTAAAGGACTGGCTAA  550

seq1  TGTATGCATACAAGCGTCAAAAAGTAAGACAAGAAAAATAACAATTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATACAAGCGTCAAAAAGTAAGACAAGAAAAATAACAATTATGA  600

seq1  TCAGATTAATTCATTAATCCTATGATTTTATTCAAGTATACAGAAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAATTCATTAATCCTATGATTTTATTCAAGTATACAGAAGTATA  650

seq1  CTTGCCTTGAGAGTGATGGGTATAAGCACTCAGGGGTGTGGACAACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTGAGAGTGATGGGTATAAGCACTCAGGGGTGTGGACAACTGGT  700

seq1  GAATGCATTTGGAAATGGCAAGGTTGCATATTTGGAATCCGAAACAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATTTGGAAATGGCAAGGTTGCATATTTGGAATCCGAAACAGTTC  750

seq1  TATAACTGAGCAAAGGCAAGGACAATATTTGGATCAGGAAGCAATGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGAGCAAAGGCAAGGACAATATTTGGATCAGGAAGCAATGAAAT  800

seq1  TGAACATATGTGCTTTCGCTTCTGTATCTCAATGAACTTGGGATACAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATATGTGCTTTCGCTTCTGTATCTCAATGAACTTGGGATACAAAT  850

seq1  CTGGGCAGATCAAGAAGTAAAAAATTACTTATAAGCTATTCTCTGTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGATCAAGAAGTAAAAAATTACTTATAAGCTATTCTCTGTAAAC  900

seq1  TGTTGTGACTAGGTTAACTCAATTCTTCAGTCAAAATCTTATTCCTATAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTTGTGACTAGGTTAACTCAATTCTTCAGTCAAAATCTTATTCCTAT-A  949

seq1  AAGGTTTGAGTGACAGTTTAAAATCCAGAATCTCTTGGTTCAATATATTA  1000
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AAGGTTTGAGTGACAGTTTAAAATCCAGAATCTCTTGGTTTCATATATTA  999

seq1  TGGGATTGAAGTATTCAACCAGTTATATTGTCTTCATATGAATAAGTGGC  1050
      |||||||| ||||||| ||||| |||||||||||||||||||||||||||
seq2  TGGGATTG-AGTATTC-ACCAG-TATATTGTCTTCATATGAATAAGTGGC  1046

seq1  AACTTTGCACTTACTTCATAAAAATTATGTAGAATACTAGAAACATCATG  1100
       |||||||||||||||||||||| |  |||||||||||||  ||||||||
seq2  -ACTTTGCACTTACTTCATAAAATTATTGTAGAATACTAG--ACATCATG  1093

seq1  TGCAATGAGCCCTTGTGTGGTAACTTTCAGGAATATAT--GCCACTTTCC  1148
      ||| |||||||| ||||| |  || |||||||||||||   |||||||||
seq2  TGCCATGAGCCCCTGTGTTGGTAC-TTCAGGAATATATTGTCCACTTTCC  1142

seq1  AAAGGCAAATAGTGAAGCTAG-TTACATAG  1177
      |   || ||||||||  |||| ||||||||
seq2  A---GC-AATAGTGAGCCTAGTTTACATAG  1168