BAC Information

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BAC

Clone NameB6Ng01-343J07
Chromosome17 (Build37)
Map Location 37,624,041 - 37,624,651
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2
Downstream geneOlfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343J07.bB6Ng01-343J07.g
ACCGA126321GA126322
length1,2371,136
definitionB6Ng01-343J07.b B6Ng01-343J07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgattcagagctactaagagctggctccttgagctcat
ctagtgatgagtataggctccttctcctagaaacctccgctgattgatct
tttttcttttctttttccttctccttccttccaatctctccccaggtatt
cttacctgaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgcaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagattgccctgaatttcatccagaattttccaccc
tgccttaaccgcttgataacatgtgaaaaggaacaaaaagactcctaaca
ctggagaaagttcaaggccaaacataccttgtaaagctatttcccacttt
acttctgatagactgtcttgaatttcattagaaagttcaaggccagacgt
accttgtaaagctgttccccactttacttctgatagactgacttgaattt
cgttagaaagttcaagaccagacttaccttgtaaagctgtacttacgggt
acccctgttccccagctgaagagttctgaatccacacagttgaatccttc
tcaacagtctgtgttgcaggaacacttcattaccaccgttccccagctga
agagttctgaatccacgccagatccttctcaacagtctgtgttgcaggaa
cacttcattaccaccgttccccagctgaagagttctgaatccacaccgga
tccttctcaacagtctgttttgcaggaacctttatgaccgtgacccacag
ttctggttccggaatgagggatcttccttgcgccgatggtggtaactccc
atcccgggttttctcgtcccgggtttcagcaccaactcttacacgcgttc
tcgaccggccaggaagaatgcagcaaaccggaatcttctgcggcaaaagc
tttattgcttacatcttcaggagcaagagagcaagagagagaatggcaaa
accccgtcccttttaaggagattatcctccgcctaggacgtgtcacctcc
ctgattggctgcagccattggacgtgttgtcgttcacagggaagcaggag
cacatggagtggagaacctacccttggccaatgcgcgaatatattttgtt
aacaacttagaaacaacatgtcaatgccatctggtaacgcggcaatgtgt
tagagggcagagacttctctccctgggagaggagact
gaattcctgatttgactcaaataattttaggaagaaagtttaaggaaatg
gttttagttgttttgccagaatgatgtaataacgttaaaatcaagaatgg
aatgtgccccctccccatacaatagtaaataaaggatgtataataaggaa
tacaatgagctttcataaaatgcattaagaagaaaaataggcttgggaca
gatttgtgatcaaggaaaatcatacattctaggtcaggtccaagagttag
gccacaggtgtgcactataatagagcaaggttatgggaaacagttgcttt
gcacttataatgagcttatggaatgaaacactgctttgagcttactatag
acattcttctgtaatggctttttctgtaattttatctgtgaggtaatgtt
ataaagaactttttgtctaagaagctataaaaaggctgagagaaaaaaaa
taaaagtgtggcagtggggctctgttacatccacaaaatgtatatatttg
tacatatgtatgtacagctttatgtatgtacatacatacataatatacat
gcatgtgtgttgtgtccggccagcagaccacaacctgggttctagcctgg
aaaggcattttggaaacctggaagagaagaggggctaggtggcgagagaa
aggaatgtagccaagacagttattctgatcaaagctcaaattttattgtt
gcgacactagttatgaaggaagtgggaggggacccgattcccgccgaata
atctctggtccagtagaaaggtgcatgtgtgtggctccgcaggttctagc
agtgggcgtggcagaacgaatgagcaggaagctccacccctgagcaagca
ggtttcaggctgggggaggggagactacacatgtgcataagtatacatgt
gtacttgtgaaattgattaaaccaatggccaggtctggctgagtgtttgt
gtgtgtgtatgcatgactttctctttatcctttttctttctctctggctc
aagaagagtaaaaggcctcctgggcattttcttttaactttatagtactt
ttaatatagaatattttgttatttacatgtcaaggtattcccctttctag
gtttccccttccaaaaattccctatatccctccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37624041_37624651
seq2: B6Ng01-343J07.g_593_1201

seq1  GTACATACATACATAATATACATGCATGTGTGTTGTGTCCGGCCAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACATACATAATATACATGCATGTGTGTTGTGTCCGGCCAGCAGA  50

seq1  CCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGA  100

seq1  AGAGGGGCTAGGTGGCGAGAGAAAGGAATGTAGCCAAGACAGTTATTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTAGGTGGCGAGAGAAAGGAATGTAGCCAAGACAGTTATTCTG  150

seq1  ATCAAAGCTCAAATTTTATTGTTGCGACACTAGTTATGAAGGAAGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTCAAATTTTATTGTTGCGACACTAGTTATGAAGGAAGTGGGA  200

seq1  GGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCCGATTCCCGCCGAATAATCTCTGGTCCAGTAGAAAGGTGCATG  250

seq1  TGTGTGGCTCCGCAGGTTCTAGCAGTGGGCGTGGCAGAACGAATGAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTCCGCAGGTTCTAGCAGTGGGCGTGGCAGAACGAATGAGCAG  300

seq1  GAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAGGGGAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAGGGGAGACTA  350

seq1  CACATGTGCATAAGTATACATGTGTACTTGTGAAATTGATTAAACCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGCATAAGTATACATGTGTACTTGTGAAATTGATTAAACCAATG  400

seq1  GCCAGGTCTGGCTGAGTGTTTGTGTGTGTGTATGCATGACTTTCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCTGGCTGAGTGTTTGTGTGTGTGTATGCATGACTTTCTCTTTA  450

seq1  TCCTTTTTCTTTCTCTCTGGCTCAAGAAGAGTAAAAGGCCTCCTTGGCCA  500
      |||||||||||||||||||||||||||||||||||||||||||| |||  
seq2  TCCTTTTTCTTTCTCTCTGGCTCAAGAAGAGTAAAAGGCCTCCTGGGCAT  500

seq1  TTTCTTTTAACTTTATTAGTACCTTTTAATATTAGATATTTTGTTTATTT  550
      ||||||||||||||| ||||| ||||||||||   |||||||| ||||||
seq2  TTTCTTTTAACTTTA-TAGTA-CTTTTAATATAGAATATTTTG-TTATTT  547

seq1  ACATGTCAAAGGTTATCCCCTTTCCTAGTTTCCCC-TCCAAAAATCCCCT  599
      ||||||| |||||  |||||||||   |||||||| ||||||||| ||||
seq2  ACATGTC-AAGGTATTCCCCTTTCTAGGTTTCCCCTTCCAAAAATTCCCT  596

seq1  ATA-CCCTCCCCC  611
      ||| |||||||||
seq2  ATATCCCTCCCCC  609