BAC Information

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BAC

Clone NameB6Ng01-343N07
Chromosome17 (Build37)
Map Location 41,482,271 - 41,606,333
singlet/doubletdoublet
Overlap geneLOC627577
Upstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
Downstream geneLOC627626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N07.bB6Ng01-343N07.g
ACCGA126501GA126502
length1,0601,154
definitionB6Ng01-343N07.b B6Ng01-343N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,605,261 - 41,606,333)(41,482,271 - 41,483,436)
sequence
gaattccatgcacaaaataggttgtttcatggatcaatagaaaacaacag
taaagaatgtagcaagaactgtggtattcttcaatttgtcctctgtgctc
catcttttagcccacaattctgcctgcattcctggagtcctgctggcaca
agggaaagtaaggtaagagcacccttgtccctgaccattgcctgctaagt
ctcattaaggcatatccaaaagcagtaaactgcacccagtaccctgtgtt
ccattttccagctcacatctacctacattcctgaagtcttgcaagcacca
aggacaacaggataagatccccttttccccatcccctgccagccaatctc
cctaaagcacacccaatagccataaactgttccatgcccccaaactctat
ttcctgtcctacattgtacctgttttgcagaaggccactctggcaccagg
caccccaggttatgctggtgttaagaaccctagaaacagggtgccaaaac
ccacacatgccgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaac
agagaagaaatgcccagcttcccccgaagacttactaatcactagaagcc
caggccactcaggccaaaagacagaaaccaaaagaaaaaaaaatccagaa
aaacacccatccactaatgataaactaaaaaaaatcagcatctaagcctg
taataaccacaaaacctagatggctaaaggacagcatcaacacaaacaaa
aagaattagatcaatatgacatcattagaacccagttatcctactacagc
aaaccttggatatcctaacataggggaagtaggagaaaatgaccttaagt
ctaatcttatgaagatgacagaggaaataaagaagaaatgaataattttc
attaaggaaatacagggaaatgcaataagcagtaaagaaagtgataaact
gttcagatatgaatatgggtatagaagcagtaagaacaccacaagtgaga
tcctagagatgaaatttgtaagagaacaaagctcagatacagcaatcacc
ccacagaaca

gaattcctatggttgtttctgctggcttaagaaagaaacttgagaagaat
gtccatgaattttaaagtaaattgaatacttggatgtgagagacttgaca
ggaaaatgattcagaaataaaactgtttcagcagcagttagagaaatcag
tgattttctttcaataatgaaaatctttctctgacagctgtgctgtagca
caaaattaccaagacataaactaaggcatgtgcttttgagataaatcaac
tagagtacatgggacaacaaaataaataaattgattgaaacatgggaagt
aggagaggaacttgaatctctctaccatgacaatgtttttcttagcatgc
taaaaattcactttgaagttgagtttttttttttaatagatttgagttta
aattataaaggccagccgggctgcggtggtgcacatctctaatcccagca
cttgggaggcagaggcagaggcaggtggattataaagaccaaagttaaca
tatttatctacctgttattagtgggactagtctctattttttaagtagat
attataatttctattataaacaactaacaaaattttatctttgattttca
aacttttaagatatggatgcttgctctctgctcctccctgatccagagac
agtcacattttcttgtgctcatcccatagacaaaatggtgaatggatttg
actgtatcgggcacctggttaccagggctgccttctgctctacatctggc
aaagtggatattgttgccatcaacaccccttcattgacctcaactacatg
gtctacatgttccagtatgactccacccatggcaaattcaacggcaaaat
caaaggctgagaatgggaatcttgtcgtcaataggaagcccataaccatc
ttccatactgagatcctgctaacatcaaacggggtaatgtggggctgagt
aggtagtggagtctattagcgtctcaccacaatgagaagccgggcctctt
gagtgggcaaaggtcatcatctctgctcttctgatgatgccccatgttta
tgatgggtgtgaaccacgaataaatggacacctcactcaaggaattgtca
gcatgcattcttgcaacaactgtttagccccccttgccaagtctaatcat
gaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41605261_41606333
seq2: B6Ng01-343N07.b_46_1105 (reverse)

seq1  TGTTCTGT-GGGTGATGCTTGTATCTGAAGCTTTTGTTCTCTTACCAAAT  49
      |||||||| |||||||   |||||||| ||| |||||||||||| |||||
seq2  TGTTCTGTGGGGTGATTGCTGTATCTG-AGC-TTTGTTCTCTTA-CAAAT  47

seq1  TTTCCATCTCTAGGATTCCTTCACTTTGTGTTG-TCTTACTGCTTCTATA  98
      ||  ||||||||||||    |||| ||||| || ||||||||||||||||
seq2  TT--CATCTCTAGGAT---CTCAC-TTGTGGTGTTCTTACTGCTTCTATA  91

seq1  CCCATATTCATATCTTGAACAGTTTTATTCACTTTCTTTACTTGCTTTAT  148
      |||||||||||||| ||||||||||   ||||||||||||| ||| ||||
seq2  CCCATATTCATATC-TGAACAGTTT--ATCACTTTCTTTAC-TGC-TTAT  136

seq1  TGCATTTTCCTGTATTTCCTTAATGAAAATTTATTCATTTCTTCTTTATT  198
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCATTTCCCTGTATTTCCTTAATGAAAA-TTATTCATTTCTTCTTTATT  185

seq1  TCCTCTGTCATCTTCATAAGATTAGACTTAAGGTCATTTTCTCCTACTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTCATCTTCATAAGATTAGACTTAAGGTCATTTTCTCCTACTTC  235

seq1  CCCTATGTTAGGATATCCAAGGTTTGCTGTAGTAGGATAACTGGGTTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTTAGGATATCCAAGGTTTGCTGTAGTAGGATAACTGGGTTCTA  285

seq1  ATGATGTCATATTGATCTAATTCTTTTTGTTTGTGTTGATGCTGTCCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTCATATTGATCTAATTCTTTTTGTTTGTGTTGATGCTGTCCTTT  335

seq1  AGCCATCTAGGTTTTGTGGTTATTACAGGCTTAGATGCTGATTTTTTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTAGGTTTTGTGGTTATTACAGGCTTAGATGCTGATTTTTTTTA  385

seq1  GTTTATCATTAGTGGATGGGTGTTTTTCTGGATTTTTTTTTCTTTTGGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCATTAGTGGATGGGTGTTTTTCTGGATTTTTTTTTCTTTTGGTT  435

seq1  TCTGTCTTTTGGCCTGAGTGGCCTGGGCTTCTAGTGATTAGTAAGTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTTGGCCTGAGTGGCCTGGGCTTCTAGTGATTAGTAAGTCTTC  485

seq1  GGGGGAAGCTGGGCATTTCTTCTCTGTTCTTTTTTTTTTTTTTTTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGCTGGGCATTTCTTCTCTGTTCTTTTTTTTTTTTTTTTTTTTT  535

seq1  TTTTTTTTTTTTGCGGCATGTGTGGGTTTTGGCACCCTGTTTCTAGGGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGCGGCATGTGTGGGTTTTGGCACCCTGTTTCTAGGGTT  585

seq1  CTTAACACCAGCATAACCTGGGGTGCCTGGTGCCAGAGTGGCCTTCTGCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACACCAGCATAACCTGGGGTGCCTGGTGCCAGAGTGGCCTTCTGCA  635

seq1  AAACAGGTACAATGTAGGACAGGAAATAGAGTTTGGGGGCATGGAACAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTACAATGTAGGACAGGAAATAGAGTTTGGGGGCATGGAACAGT  685

seq1  TTATGGCTATTGGGTGTGCTTTAGGGAGATTGGCTGGCAGGGGATGGGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTATTGGGTGTGCTTTAGGGAGATTGGCTGGCAGGGGATGGGGA  735

seq1  AAAGGGGATCTTATCCTGTTGTCCTTGGTGCTTGCAAGACTTCAGGAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGATCTTATCCTGTTGTCCTTGGTGCTTGCAAGACTTCAGGAATG  785

seq1  TAGGTAGATGTGAGCTGGAAAATGGAACACAGGGTACTGGGTGCAGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGATGTGAGCTGGAAAATGGAACACAGGGTACTGGGTGCAGTTTA  835

seq1  CTGCTTTTGGATATGCCTTAATGAGACTTAGCAGGCAATGGTCAGGGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTGGATATGCCTTAATGAGACTTAGCAGGCAATGGTCAGGGACA  885

seq1  AGGGTGCTCTTACCTTACTTTCCCTTGTGCCAGCAGGACTCCAGGAATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTCTTACCTTACTTTCCCTTGTGCCAGCAGGACTCCAGGAATGC  935

seq1  AGGCAGAATTGTGGGCTAAAAGATGGAGCACAGAGGACAAATTGAAGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAATTGTGGGCTAAAAGATGGAGCACAGAGGACAAATTGAAGAAT  985

seq1  ACCACAGTTCTTGCTACATTCTTTACTGTTGTTTTCTATTGATCCATGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTTCTTGCTACATTCTTTACTGTTGTTTTCTATTGATCCATGAA  1035

seq1  ACAACCTATTTTGTGCATGGAATTC  1073
      |||||||||||||||||||||||||
seq2  ACAACCTATTTTGTGCATGGAATTC  1060


seq1: chr17_41482271_41483436
seq2: B6Ng01-343N07.g_67_1220

seq1  GAATTCCTATGGTTGTTTCTGCTGGCTTAAGAAAGAAACTTGAGAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGTTGTTTCTGCTGGCTTAAGAAAGAAACTTGAGAAGAAT  50

seq1  GTCCATGAATTTTAAAGTAAATTGAATACTTGGATGTGAGAGACTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGAATTTTAAAGTAAATTGAATACTTGGATGTGAGAGACTTGACA  100

seq1  GGAAAATGATTCAGAAATAAAACTGTTTCAGCAGCAGTTAGAGAAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATGATTCAGAAATAAAACTGTTTCAGCAGCAGTTAGAGAAATCAG  150

seq1  TGATTTTCTTTCAATAATGAAAATCTTTCTCTGACAGCTGTGCTGTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCTTTCAATAATGAAAATCTTTCTCTGACAGCTGTGCTGTAGCA  200

seq1  CAAAATTACCAAGACATAAACTAAGGCATGTGCTTTTGAGATAAATCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACCAAGACATAAACTAAGGCATGTGCTTTTGAGATAAATCAAC  250

seq1  TAGAGTACATGGGACAACAAAATAAATAAATTGATTGAAACATGGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACATGGGACAACAAAATAAATAAATTGATTGAAACATGGGAAGT  300

seq1  AGGAGAGGAACTTGAATCTCTCTACCATGACAATGTTTTTCTTAGCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGAACTTGAATCTCTCTACCATGACAATGTTTTTCTTAGCATGC  350

seq1  TAAAAATTCACTTTGAAGTTGAGTTTTTTTTTTTAATAGATTTGAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTCACTTTGAAGTTGAGTTTTTTTTTTTAATAGATTTGAGTTTA  400

seq1  AATTATAAAGGCCAGCCGGGCTGCGGTGGTGCACATCTCTAATCCCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAAGGCCAGCCGGGCTGCGGTGGTGCACATCTCTAATCCCAGCA  450

seq1  CTTGGGAGGCAGAGGCAGAGGCAGGTGGATTATAAAGACCAAAGTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAGGCAGAGGCAGGTGGATTATAAAGACCAAAGTTAACA  500

seq1  TATTTATCTACCTGTTATTAGTGGGACTAGTCTCTATTTTTTAAGTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCTACCTGTTATTAGTGGGACTAGTCTCTATTTTTTAAGTAGAT  550

seq1  ATTATAATTTCTATTATAAACAACTAACAAAATTTTATCTTTGATTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTCTATTATAAACAACTAACAAAATTTTATCTTTGATTTTCA  600

seq1  AACTTTTAAGATATGGATGCTTGCTCTCTGCTCCTCCCTGATCCAGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAAGATATGGATGCTTGCTCTCTGCTCCTCCCTGATCCAGAGAC  650

seq1  AGTCACATTTTCTTGTGCTCATCCCATAGACAAAATGGTGAATGGATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATTTTCTTGTGCTCATCCCATAGACAAAATGGTGAATGGATTTG  700

seq1  ACTGTATCGGGCACCTGGTTACCAGGGCTGCCTTCTGCTCTACATCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCGGGCACCTGGTTACCAGGGCTGCCTTCTGCTCTACATCTGGC  750

seq1  AAAGTGGATATTGTTGCCATCAACACCCCTTCATTGACCTCAACTACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGATATTGTTGCCATCAACACCCCTTCATTGACCTCAACTACATG  800

seq1  GTCTACATGTTCCAGTATGACTCCACCCATGGCAAATTCAACGGCAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATGTTCCAGTATGACTCCACCCATGGCAAATTCAACGGCAAAAT  850

seq1  C-AAGGCTGAGAATGGGAATCTTGTCGTCAATAGGAAGCCCATAACCATC  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGAGAATGGGAATCTTGTCGTCAATAGGAAGCCCATAACCATC  900

seq1  TTCCATACTGAGATCCTGCTAACATCAAACGGGGTAATGTTGGGGCTGAG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCCATACTGAGATCCTGCTAACATCAAACGGGGTAATG-TGGGGCTGAG  949

seq1  TAGGTAGTGGAGTCTATTAGCGTCTTCACCACAATGGAGAAGGCCGGGGC  999
      |||||||||||||||||||||||| |||||||||| ||||| ||||||  
seq2  TAGGTAGTGGAGTCTATTAGCGTC-TCACCACAAT-GAGAA-GCCGGG--  994

seq1  CCTCTTGAAGGGTGGGGCCAAAAGGGTCATCATCTCTGCCTCTTCTGATG  1049
      ||||||||   |||||  ||||  |||||||||||||| |||||||||||
seq2  CCTCTTGA---GTGGG--CAAA--GGTCATCATCTCTG-CTCTTCTGATG  1036

seq1  ATGCCCCCATGTTTATGATGGGTGTGAACCACG-ATAAATATGACAACTC  1098
      ||| ||||||||||||||||||||||||||||| ||||||  |||| |||
seq2  ATG-CCCCATGTTTATGATGGGTGTGAACCACGAATAAAT-GGACACCTC  1084

seq1  ACTCAAG--ATTGTCAGCAATGCA-TCCTGCAACAACTGTTTAGCCCCCC  1145
      |||||||  ||||||||| ||||| || ||||||||||||||||||||||
seq2  ACTCAAGGAATTGTCAGC-ATGCATTCTTGCAACAACTGTTTAGCCCCCC  1133

seq1  TGGCCAAGGTCATCCATGACA  1166
      | ||||||   |  |||||||
seq2  TTGCCAAGTCTAATCATGACA  1154


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