BAC Information

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BAC

Clone NameB6Ng01-344A08
Chromosome17 (Build37)
Map Location 83,497,781 - 83,594,888
singlet/doubletdoublet
Overlap geneLOC100043900
Upstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
Downstream geneAW548124, EG545226, Eml4, Cox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344A08.bB6Ng01-344A08.g
ACCGA126632GA126633
length1,0931,208
definitionB6Ng01-344A08.b B6Ng01-344A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,593,773 - 83,594,888)(83,497,781 - 83,499,000)
sequence
gaattcaacaaaggtgccaggtggttcaatgtatgacaaggttgcaagtc
ataactggaaactttggacaacagaactcatgtgtctttcctcaatggtg
gtcagcaagagattgacaaattctaggaagatgacagggagacccaccag
gcggttaggaagtgttcagtatggctctgaaaccaataataaggcactga
agatagaaagaagcgatgggttcgggcgatgcttgggagcacggatctta
gaaatgtaatatgtatgacaggcaaggtgagaaggaactgagaccaaacc
ctgggtcccggggttgtcaggtgcacaggtgaaggagaggccatcattta
gataagattaccatggggggagacctagtctgggggataagattatgagt
ttaatcttagacctattgatcacaggggacttctggaaactgaaaaggaa
accatgaagcccagaacaggagatttccaatgcccgtcatctaaaccatc
atggttagtgtggaaaaggttggtcttcagctaagcaaagagacttccat
caaaggaaacaacagagactagctcttgtgtgggaaaatgcagacatata
attcccattgtgagagacaaagtcatagaggctgaagtaaaattacatat
ggtctgagggaacaaaatgaaagacagaatccatgtgggtagatggcatg
tgtcgctgtcactgaaagggtttgctgacacaaatatgaaatgataggca
gtgactcacagagaaggcaattcaatctgcacacttgcccctgaccttgg
gtgccttagccgagcttggaggttgctctaactgaaccaatgccaaactg
ggtggggatgcacggggagatgcgatgtcgtctacaagcactgtgggaag
acactgcactttaaacacacagagagaaaatgggctgaggtgattcacat
ggggaaagagctcaggcagcaaggtggcatggctagcctctcagctgtcc
tggggagggatgtaagctgtgaaattagattgcctgatgcaggagcttca
ttgctctggagaagagctatctctcaagacatttgcctagcgt

gaattccagtgtgatgtttttgatatgttcccaaagatccaggatatttg
gtgagatagaaggttaaaatggggatcttatttgctgaaaaacaccaaag
gaacgatattgcgtcaatcaaggatggaatacagagcacctgagagcagg
tggggtacttctggggagcggaaggaaaggatgcagctgttggcattttg
tacaacgagctgttcctgaatcccattgccctgcctgcagtcaaactgag
tgctaccatgtgggacactagaaacatttgcaacctgctttgcccggtgc
ctaggatcaccgtccagaagcagtgctggcttgactcatagacccagtca
gagaacagctaccacccaaagagaaataccatagcctaggctttccccac
atgcaattctttccagaaaggaactctgccaagaggcaagagctaccgag
aagagggaggggagatggcatattggagccatgtggggaaagttgatttt
ttggcagtgcccacactcaaagacagcagagggatcgtactcagcaaagg
atccccttactcccgtccccagcatctagggagagcacgtttgtctgtct
cttctaagactcatgcaagttcatgaaagtctccctatgagggccgacat
gcagccggtctctacccagccctccccaaaacctttgagcattcctattc
cccacacaccccaaattagcccgagtgtcaatccaaaaggcaaggcaagg
aaatgcaaaccagggagccagcagccctgggctctgagttccctcctccc
tcagagctcaactcaacgcagacttgcctctcctcggttggagcctgagg
caggctcatttccccttaggttgtcacagaccaattttctaaactgcatg
aaaacagaaaacaaacagaaaagtaaatccaccaaagcctggatctcgtg
aacagcttggcagccagagcaacgtgctaacaatttcatgctgttttaag
actttctaactagcacagtaccacaccagatgtgccctgattaaaaaaaa
aagaagaatgaacatcgcttctaggaacagagattgtaaaacaggaagca
cctccattcagagcaaaccaccaggcatctggctgggcatgcatcctttc
cggcttaacatgtcaaccgaggcagtcaagccggtcagcaaatgtggaga
cacttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83593773_83594888
seq2: B6Ng01-344A08.b_47_1139 (reverse)

seq1  ACGCTTAGGCAAATGGTCCTTGAGAAGATAGCTCCCTCCTCCCAGAGCAA  50
      |||| ||||||||||   |||||| ||||||||  || || |||||||||
seq2  ACGC-TAGGCAAATG--TCTTGAG-AGATAGCT--CTTCT-CCAGAGCAA  43

seq1  TGAAGCCTCCCTGGCCATCAGGCCATTCCTAAATTTCACAGCCTACATCC  100
      ||||||   ||||  |||||||| ||  || ||||||||||| |||||||
seq2  TGAAGC--TCCTG--CATCAGGCAAT--CT-AATTTCACAGCTTACATCC  86

seq1  CCTCCCCCAGGGCCAGGCTGGAGAGGCTAGCCATTGCCACCTTGCTGCCC  150
      |   ||||||| |   ||| ||||||||||||| ||||||||||||| ||
seq2  C--TCCCCAGGAC--AGCT-GAGAGGCTAGCCA-TGCCACCTTGCTG-CC  129

seq1  TGAGCCTCTTTCCCCATGTGAATCACCTCAGCCCATTTTTCTCTCTGTGT  200
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAG-CTCTTTCCCCATGTGAATCACCTCAGCCCA-TTTTCTCTCTGTGT  177

seq1  GTTTAAAGTGCAGTGTCTTCCCACAGTGCTTGTAGACGACATCGCATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGTGCAGTGTCTTCCCACAGTGCTTGTAGACGACATCGCATCTC  227

seq1  CCCCTGCATCCCCACCCAGTTTGGCATTGGTTCAGTTAGAGCAACCTCCA  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCATCCCCACCCAGTTTGGCATTGGTTCAGTTAGAGCAACCTCCA  277

seq1  AGCTCGGCTAAGGCACCCAAGGTCAGGGGCAAGTGTGCAGATTGAATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGGCTAAGGCACCCAAGGTCAGGGGCAAGTGTGCAGATTGAATTGC  327

seq1  CTTCTCTGTGAGTCACTGCCTATCATTTCATATTTGTGTCAGCAAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGAGTCACTGCCTATCATTTCATATTTGTGTCAGCAAACCCT  377

seq1  TTCAGTGACAGCGACACATGCCATCTACCCACATGGATTCTGTCTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACAGCGACACATGCCATCTACCCACATGGATTCTGTCTTTCAT  427

seq1  TTTGTTCCCTCAGACCATATGTAATTTTACTTCAGCCTCTATGACTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCCTCAGACCATATGTAATTTTACTTCAGCCTCTATGACTTTGT  477

seq1  CTCTCACAATGGGAATTATATGTCTGCATTTTCCCACACAAGAGCTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAATGGGAATTATATGTCTGCATTTTCCCACACAAGAGCTAGTC  527

seq1  TCTGTTGTTTCCTTTGATGGAAGTCTCTTTGCTTAGCTGAAGACCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTTCCTTTGATGGAAGTCTCTTTGCTTAGCTGAAGACCAACCT  577

seq1  TTTCCACACTAACCATGATGGTTTAGATGACGGGCATTGGAAATCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACACTAACCATGATGGTTTAGATGACGGGCATTGGAAATCTCCTG  627

seq1  TTCTGGGCTTCATGGTTTCCTTTTCAGTTTCCAGAAGTCCCCTGTGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTTCATGGTTTCCTTTTCAGTTTCCAGAAGTCCCCTGTGATCA  677

seq1  ATAGGTCTAAGATTAAACTCATAATCTTATCCCCCAGACTAGGTCTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTAAGATTAAACTCATAATCTTATCCCCCAGACTAGGTCTCCCC  727

seq1  CCATGGTAATCTTATCTAAATGATGGCCTCTCCTTCACCTGTGCACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTAATCTTATCTAAATGATGGCCTCTCCTTCACCTGTGCACCTGA  777

seq1  CAACCCCGGGACCCAGGGTTTGGTCTCAGTTCCTTCTCACCTTGCCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCGGGACCCAGGGTTTGGTCTCAGTTCCTTCTCACCTTGCCTGTC  827

seq1  ATACATATTACATTTCTAAGATCCGTGCTCCCAAGCATCGCCCGAACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATTACATTTCTAAGATCCGTGCTCCCAAGCATCGCCCGAACCCA  877

seq1  TCGCTTCTTTCTATCTTCAGTGCCTTATTATTGGTTTCAGAGCCATACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCTTTCTATCTTCAGTGCCTTATTATTGGTTTCAGAGCCATACTG  927

seq1  AACACTTCCTAACCGCCTGGTGGGTCTCCCTGTCATCTTCCTAGAATTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCCTAACCGCCTGGTGGGTCTCCCTGTCATCTTCCTAGAATTTG  977

seq1  TCAATCTCTTGCTGACCACCATTGAGGAAAGACACATGAGTTCTGTTGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTCTTGCTGACCACCATTGAGGAAAGACACATGAGTTCTGTTGTC  1027

seq1  CAAAGTTTCCAGTTATGACTTGCAACCTTGTCATACATTGAACCACCTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTCCAGTTATGACTTGCAACCTTGTCATACATTGAACCACCTGG  1077

seq1  CACCTTTGTTGAATTC  1116
      ||||||||||||||||
seq2  CACCTTTGTTGAATTC  1093


seq1: chr17_83497781_83499000
seq2: B6Ng01-344A08.g_67_1274

seq1  GAATTCCAGTGTGATGTTTTTGATATGTTCCCAAAGATCCAGGATATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTGATGTTTTTGATATGTTCCCAAAGATCCAGGATATTTG  50

seq1  GTGAGATAGAAGGTTAAAATGGGGATCTTATTTGCTGAAAAACACCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATAGAAGGTTAAAATGGGGATCTTATTTGCTGAAAAACACCAAAG  100

seq1  GAACGATATTGCGTCAATCAAGGATGGAATACAGAGCACCTGAGAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATATTGCGTCAATCAAGGATGGAATACAGAGCACCTGAGAGCAGG  150

seq1  TGGGGTACTTCTGGGGAGCGGAAGGAAAGGATGCAGCTGTTGGCATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTACTTCTGGGGAGCGGAAGGAAAGGATGCAGCTGTTGGCATTTTG  200

seq1  TACAACGAGCTGTTCCTGAATCCCATTGCCCTGCCTGCAGTCAAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACGAGCTGTTCCTGAATCCCATTGCCCTGCCTGCAGTCAAACTGAG  250

seq1  TGCTACCATGTGGGACACTAGAAACATTTGCAACCTGCTTTGCCCGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCATGTGGGACACTAGAAACATTTGCAACCTGCTTTGCCCGGTGC  300

seq1  CTAGGATCACCGTCCAGAAGCAGTGCTGGCTTGACTCATAGACCCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCACCGTCCAGAAGCAGTGCTGGCTTGACTCATAGACCCAGTCA  350

seq1  GAGAACAGCTACCACCCAAAGAGAAATACCATAGCCTAGGCTTTCCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCTACCACCCAAAGAGAAATACCATAGCCTAGGCTTTCCCCAC  400

seq1  ATGCAATTCTTTCCAGAAAGGAACTCTGCCAAGAGGCAAGAGCTACCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTCTTTCCAGAAAGGAACTCTGCCAAGAGGCAAGAGCTACCGAG  450

seq1  AAGAGGGAGGGGAGATGGCATATTGGAGCCATGTGGGGAAAGTTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGGGGAGATGGCATATTGGAGCCATGTGGGGAAAGTTGATTTT  500

seq1  TTGGCAGTGCCCACACTCAAAGACAGCAGAGGGATCGTACTCAGCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGCCCACACTCAAAGACAGCAGAGGGATCGTACTCAGCAAAGG  550

seq1  ATCCCCTTACTCCCGTCCCCAGCATCTAGGGAGAGCACGTTTGTCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTACTCCCGTCCCCAGCATCTAGGGAGAGCACGTTTGTCTGTCT  600

seq1  CTTCTAAGACTCATGCAAGTTCATGAAAGTCTCCCTATGAGGGCCGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGACTCATGCAAGTTCATGAAAGTCTCCCTATGAGGGCCGACAT  650

seq1  GCAGCCGGTCTCTACCCAGCCCTCCCCAAAACCTTTGAGCATTCCTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGGTCTCTACCCAGCCCTCCCCAAAACCTTTGAGCATTCCTATTC  700

seq1  CCCACACACCCCAAATTAGCCCGAGTGTCAATCCAAAAGGCAAGGCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCCCAAATTAGCCCGAGTGTCAATCCAAAAGGCAAGGCAAGG  750

seq1  AAATGCAAACCAGGGAGCCAGCAGCCCTGGGCTCTGAGTTCCCTCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAACCAGGGAGCCAGCAGCCCTGGGCTCTGAGTTCCCTCCTCCC  800

seq1  TCAGAGCTCAACTCAACGCAGACTTGCCTCTCCTCGGTTGGAGCCTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCAACTCAACGCAGACTTGCCTCTCCTCGGTTGGAGCCTGAGG  850

seq1  CAGGCTCATTTCCCCTTAGGTTGTCACAGACCAATTTTCTAAACTGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCATTTCCCCTTAGGTTGTCACAGACCAATTTTCTAAACTGCATG  900

seq1  AAAACAGAAAACAAACAGAAAAGTAAATCCACCAAAGCCTGGATCTCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAAAACAAACAGAAAAGTAAATCCACCAAAGCCTGGATCTCGTG  950

seq1  AACAGCTTGGCAGGCCAGAGCAACGTGCTAACAATTTCATGCTGTTTTAA  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTGGCA-GCCAGAGCAACGTGCTAACAATTTCATGCTGTTTTAA  999

seq1  GACTTTCTAACTAAGCAACAAGTACCAACAACCAGATGTGCCCTGATTTA  1050
      |||||||||||| ||||   |||||||   ||||||||||||||||||  
seq2  GACTTTCTAACT-AGCA--CAGTACCA--CACCAGATGTGCCCTGATT--  1042

seq1  AAAAAAAAAAAGAAGAATGAACATCGGCTTCTAGGGACAGAGATTTGTAA  1100
       |||||||||||||||||||||||| ||||||||| ||||||| ||||||
seq2  -AAAAAAAAAAGAAGAATGAACATC-GCTTCTAGGAACAGAGA-TTGTAA  1089

seq1  AACAGGAAAGCAC--TCATCAAGAAGCAAAACCACCAAGCATCCTGGCCT  1148
      |||||| ||||||   |||  || ||| ||||||||| |||| |||||  
seq2  AACAGG-AAGCACCTCCATTCAG-AGC-AAACCACCAGGCAT-CTGGC--  1133

seq1  GGGGCATGCATCCTCTCCGGCTAAACATGGCCAACCGAGGCAGTCAAG-C  1197
       ||||||||||||| ||||||| ||||| | ||||||||||||||||| |
seq2  TGGGCATGCATCCTTTCCGGCTTAACAT-GTCAACCGAGGCAGTCAAGCC  1182

seq1  GGTCAGCAA--GTGG-GAGACTTCTG  1220
      |||||||||  |||| || |||||||
seq2  GGTCAGCAAATGTGGAGACACTTCTG  1208


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