BAC Information

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BAC

Clone NameB6Ng01-344D10
Chromosome17 (Build37)
Map Location 58,994,198 - 59,107,314
singlet/doubletdoublet
Overlap gene2610034M16Rik
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216, LOC668648
Downstream geneNudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344D10.bB6Ng01-344D10.g
ACCGA126769GA126770
length1,0241,175
definitionB6Ng01-344D10.b B6Ng01-344D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,994,198 - 58,995,224)(59,106,141 - 59,107,314)
sequence
gaattctgttgctattgtctcctgtgattgagtttgtgcagtgaatgcag
cctctttgatttttgtttacaaaagatgctgagatttccatggattaaca
catgatttcttatgtctccatgtgtttttgaaataaaagtgcctgtttat
tggtgaagtttctacacatgaatggatgctacatcaaggtttttcaaata
tcatctacttttctctgtctctcttttattttttatttttagctaactta
tctttgataaggtatatctgaatctactttcatgcttttcagtggtaatt
tcttctgtcttttcatcgtatttggatatatatgtgctatcatatcatat
acatagattgggttgttacatttccatatattcattcaacaataacactg
gagttcctaaggggcaaaataattcatgtgtacaaggccatggaaggaag
gggaatgtctagcctgttgtagtactcaacaaactctactatcaaaagct
ggacatctgattagggaggacttttcaaacggaaaatagcttttctattt
cccagcttatctttagtgtgttagtgcaataaacactctggcaatataac
agaatcttgggttgagaaaatgagagttcctgccttcaagaagttcagga
tttagaaagattaacagaccattttcacatagtaataaatcaagtatgac
acaattgaatgcatttcagtaggataaggtaagaagtagaagtatagaaa
gcaaatgctttgtccagtgtagaacgaaggaggatgtcagagtgtgaatg
ttagaaccacagaccttgtcaatgaacaactgtgtgttgccataaaagtc
tcttgtatagactagagtgggtcagaaaacctgtaatttttttttctttt
tctggataaatgagtgatttaaatagagttgtagatttgggaagtaatat
gtgttaatgtgtttatggctcagagagagacttaaagttgcgggttttgt
gtttgtttgttgattggttggttt

gaattcagaaatccacctgcctctgcctcccgagtgctgggattaaaggc
gtgtgccaccatgccgggccactaggttttaagttttatgtttatgtatt
tcaggttttctttttaacattttcagttgaatttcactgtgatattttgt
tggtaagatttttcttctaataattaaaagccattgcttgtaatgacaga
aggcagtagtttgggactatataaacctgtatcttaatttacatctctgt
ttccgtctccgacgtagcaagtggaccatgaaggagctgaatgaaaagtt
tttacagttctgtattttaaaaccatgtttcatatcctatcttgaattga
tgtctcactttgatatttaatctggtttcatctagaccagaatttggaga
tcaataacccccgaaagctatcccaggaactggccctaagaggtggaaga
gccagtgatggttcccaggaagaagcaatagagcagtgggctaggcggag
gcagcagttcaaggatggcaagagatgcagctcagctgggggcagttctg
tcatcagcaacttcactgaaggctcaagtgagtacaaacccatgttccta
ggcaacaacaaagacagctgctcctcgactttattaaattccttctgttt
catctctgagatgtagattctgttctttgaccatagtgatatggtcatca
tatgaagttttgttcgtttgttttttagaaagatggtttttgaaacagtc
aactcttcattatccatttaaggaactacttcttgggagatgaccttgag
aaaacacacctgcagcataatgctaagccttcctttctcttgagacacta
aaatagctaactataggattgtttattgagttaaatttgtgctgtatttt
ttaaatctgcacttgtatataaatgtttaatgtaaaataataagatcaat
atagttgattataaatataagaaaagtttctctcattttaacatttttga
aatgaaatcttaaaaacatatatgtgattttgtgaagagtttcttcaggc
tattaaaggagtgtgtacttacagcattggaccccagcttcacaaacatg
ccttctggagaattgaatgataatgatccactgatgaaactgaactgaaa
gttaaacacttgatataacgcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58994198_58995224
seq2: B6Ng01-344D10.b_50_1073

seq1  GAATTCTGTTGCTATTGTCTCCTGTGATTGAGTTTGTGCAGTGAATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCTATTGTCTCCTGTGATTGAGTTTGTGCAGTGAATGCAG  50

seq1  CCTCTTTGATTTTTGTTTACAAAAGATGCTGAGATTTCCATGGATTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGATTTTTGTTTACAAAAGATGCTGAGATTTCCATGGATTAACA  100

seq1  CATGATTTCTTATGTCTCCATGTGTTTTTGAAATAAAAGTGCCTGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTCTTATGTCTCCATGTGTTTTTGAAATAAAAGTGCCTGTTTAT  150

seq1  TGGTGAAGTTTCTACACATGAATGGATGCTACATCAAGGTTTTTCAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGTTTCTACACATGAATGGATGCTACATCAAGGTTTTTCAAATA  200

seq1  TCATCTACTTTTCTCTGTCTCTCTTTTATTTTTTATTTTTAGCTAACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACTTTTCTCTGTCTCTCTTTTATTTTTTATTTTTAGCTAACTTA  250

seq1  TCTTTGATAAGGTATATCTGAATCTACTTTCATGCTTTTCAGTGGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAAGGTATATCTGAATCTACTTTCATGCTTTTCAGTGGTAATT  300

seq1  TCTTCTGTCTTTTCATCGTATTTGGATATATATGTGCTATCATATCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTCTTTTCATCGTATTTGGATATATATGTGCTATCATATCATAT  350

seq1  ACATAGATTGGGTTGTTACATTTCCATATATTCATTCAACAATAACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATTGGGTTGTTACATTTCCATATATTCATTCAACAATAACACTG  400

seq1  GAGTTCCTAAGGGGCAAAATAATTCATGTGTACAAGGCCATGGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTAAGGGGCAAAATAATTCATGTGTACAAGGCCATGGAAGGAAG  450

seq1  GGGAATGTCTAGCCTGTTGTAGTACTCAACAAACTCTACTATCAAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTCTAGCCTGTTGTAGTACTCAACAAACTCTACTATCAAAAGCT  500

seq1  GGACATCTGATTAGGGAGGACTTTTCAAACGGAAAATAGCTTTTCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTGATTAGGGAGGACTTTTCAAACGGAAAATAGCTTTTCTATTT  550

seq1  CCCAGCTTATCTTTAGTGTGTTAGTGCAATAAACACTCTGGCAATATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTATCTTTAGTGTGTTAGTGCAATAAACACTCTGGCAATATAAC  600

seq1  AGAATCTTGGGTTGAGAAAATGAGAGTTCCTGCCTTCAAGAAGTTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTGGGTTGAGAAAATGAGAGTTCCTGCCTTCAAGAAGTTCAGGA  650

seq1  TTTAGAAAGATTAACAGACCATTTTCACATAGTAATAAATCAAGTATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGATTAACAGACCATTTTCACATAGTAATAAATCAAGTATGAC  700

seq1  ACAATTGAATGCATTTCAGTAGGATAAGGTAAGAAGTAGAAGTATAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAATGCATTTCAGTAGGATAAGGTAAGAAGTAGAAGTATAGAAA  750

seq1  GCAAATGCTTTGTCCAGTGTAGAACGAAGGAGGATGTCAGAGTGTGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTTTGTCCAGTGTAGAACGAAGGAGGATGTCAGAGTGTGAATG  800

seq1  TTAGAACCACAGACCTTGTCAATGAACAACTGTGTGTTGCCATAAAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCACAGACCTTGTCAATGAACAACTGTGTGTTGCCATAAAAGTC  850

seq1  TCTTGTATAGACTAGAGTGGGTCAGAAAACCTGTAATTTTTTTTTCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATAGACTAGAGTGGGTCAGAAAACCTGTAATTTTTTTTTCTTTT  900

seq1  TCTGGATAAATGAGTGATTTAAAATAGAGTTGTAGATTTGGGAAGTAATA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGGATAAATGAGTGATTT-AAATAGAGTTGTAGATTTGGGAAGTAATA  949

seq1  TGTGTTAATGTGTTTATGGCTCAAGAGAGAGACTTAAAGTTGCGGGTTTT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGTTAATGTGTTTATGGCTC-AGAGAGAGACTTAAAGTTGCGGGTTTT  998

seq1  GTGTTTGTTTGGTTGATTGGTTGGTTT  1027
      |||||||||| ||||||||||||||||
seq2  GTGTTTGTTT-GTTGATTGGTTGGTTT  1024


seq1: chr17_59106141_59107314
seq2: B6Ng01-344D10.g_68_1242 (reverse)

seq1  CAGTGCGTTATTCCA--TGTTTAAC-TTCAG-TCAGTTTTCATCAGT-GA  45
      |||||||||||  ||  |||||||| ||||| |||| |||||||||| ||
seq2  CAGTGCGTTATATCAAGTGTTTAACTTTCAGTTCAG-TTTCATCAGTGGA  49

seq1  TCATTTATCA-TCCATTCT-CAGAGGCCATTGTTTGTGAAGCTGGGGTCC  93
      ||| |||||| || ||||| |||| | || ||||||||||||||||||||
seq2  TCA-TTATCATTCAATTCTCCAGAAGGCA-TGTTTGTGAAGCTGGGGTCC  97

seq1  AATGCTGGTAAGTAACACACTC--TTTATAGCCTGAAGAAACTCTTTCAC  141
      |||||| |||||| ||||||||  || ||||||||||||||||| |||||
seq2  AATGCT-GTAAGT-ACACACTCCTTTAATAGCCTGAAGAAACTC-TTCAC  144

seq1  AAAATCACATATATGTTTTTAAGATTTCATTTCAAAAAATGTTAAAATGA  191
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAATCACATATATGTTTTTAAGATTTCATTTC-AAAAATGTTAAAATGA  193

seq1  GAGAAACTTTTCTTATATTTATAATCAACTATATTGATCTTATTATTTTA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTTTTCTTATATTTATAATCAACTATATTGATCTTATTATTTTA  243

seq1  CATTAAACATTTTATATACAAGTGCAGATTTAAAAAATACAGCACAAATT  291
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACA-TTTATATACAAGTGCAGATTTAAAAAATACAGCACAAATT  292

seq1  TAACTCAATAAACAATCCTATAGTTAGCTATTTTAGTGTCTCAAGAGAAA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAATAAACAATCCTATAGTTAGCTATTTTAGTGTCTCAAGAGAAA  342

seq1  GGAAGGCTTAGCATTATGCTGCAGGTGTGTTTTCTCAAGGTCATCTCCCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTTAGCATTATGCTGCAGGTGTGTTTTCTCAAGGTCATCTCCCA  392

seq1  AGAAGTAGTTCCTTAAATGGATAATGAAGAGTTGACTGTTTCAAAAACCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGTTCCTTAAATGGATAATGAAGAGTTGACTGTTTCAAAAACCA  442

seq1  TCTTTCTAAAAAACAAACGAACAAAACTTCATATGATGACCATATCACTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAAAAAACAAACGAACAAAACTTCATATGATGACCATATCACTA  492

seq1  TGGTCAAAGAACAGAATCTACATCTCAGAGATGAAACAGAAGGAATTTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAAGAACAGAATCTACATCTCAGAGATGAAACAGAAGGAATTTAA  542

seq1  TAAAGTCGAGGAGCAGCTGTCTTTGTTGTTGCCTAGGAACATGGGTTTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCGAGGAGCAGCTGTCTTTGTTGTTGCCTAGGAACATGGGTTTGT  592

seq1  ACTCACTTGAGCCTTCAGTGAAGTTGCTGATGACAGAACTGCCCCCAGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTGAGCCTTCAGTGAAGTTGCTGATGACAGAACTGCCCCCAGCT  642

seq1  GAGCTGCATCTCTTGCCATCCTTGAACTGCTGCCTCCGCCTAGCCCACTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCATCTCTTGCCATCCTTGAACTGCTGCCTCCGCCTAGCCCACTG  692

seq1  CTCTATTGCTTCTTCCTGGGAACCATCACTGGCTCTTCCACCTCTTAGGG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTGCTTCTTCCTGGGAACCATCACTGGCTCTTCCACCTCTTAGGG  742

seq1  CCAGTTCCTGGGATAGCTTTCGGGGGTTATTGATCTCCAAATTCTGGTCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCTGGGATAGCTTTCGGGGGTTATTGATCTCCAAATTCTGGTCT  792

seq1  AGATGAAACCAGATTAAATATCAAAGTGAGACATCAATTCAAGATAGGAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAACCAGATTAAATATCAAAGTGAGACATCAATTCAAGATAGGAT  842

seq1  ATGAAACATGGTTTTAAAATACAGAACTGTAAAAACTTTTCATTCAGCTC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACATGGTTTTAAAATACAGAACTGTAAAAACTTTTCATTCAGCTC  892

seq1  CTTCATGGTCCACTTGCTACGTCGGAGACGGAAACAGAGATGTAAATTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTCCACTTGCTACGTCGGAGACGGAAACAGAGATGTAAATTAA  942

seq1  GATACAGGTTTATATAGTCCCAAACTACTGCCTTCTGTCATTACAAGCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGGTTTATATAGTCCCAAACTACTGCCTTCTGTCATTACAAGCAA  992

seq1  TGGCTTTTAATTATTAGAAGAAAAATCTTACCAACAAAATATCACAGTGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTAATTATTAGAAGAAAAATCTTACCAACAAAATATCACAGTGA  1042

seq1  AATTCAACTGAAAATGTTAAAAAGAAAACCTGAAATACATAAACATAAAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACTGAAAATGTTAAAAAGAAAACCTGAAATACATAAACATAAAA  1092

seq1  CTTAAAACCTAGTGGCCCGGCATGGTGGCACACGCCTTTAATCCCAGCAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACCTAGTGGCCCGGCATGGTGGCACACGCCTTTAATCCCAGCAC  1142

seq1  TCGGGAGGCAGAGGCAGGTGGATTTCTGAATTC  1174
      |||||||||||||||||||||||||||||||||
seq2  TCGGGAGGCAGAGGCAGGTGGATTTCTGAATTC  1175


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