BAC Information

Click to search

BAC

Clone NameB6Ng01-344M10
Chromosome17 (Build37)
Map Location 28,908,643 - 28,909,747
singlet/doubletsinglet
Overlap geneMapk13
Upstream geneD17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318
Downstream geneBrpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M10.bB6Ng01-344M10.g
ACCGA127173GA127174
length1,1301,100
definitionB6Ng01-344M10.b B6Ng01-344M10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgggcaggtggctgacctctatgttaatctgttgggcccacct
ctaagggcattctgttactggctggaaacttgctggggaggtctggaaac
tgttactgaaaaagtagctgaggaagtctggaaattgcagctgacccact
gtccttgcttcaggccaggtagctgggatattacctggtcatgaaggctg
gagcctgggggatttttttctattagcaattgactgtcttgggcttgcct
ggacttgtgggaagccacatgtgccgttgctgagtggcactgactactgc
tggccaccacgcataagattggacaaacaaccaatgtgtacatatgcagt
aaagttttttgcaaagacactgcctggcccaggcatgataatgaggttct
gtaaggtactgagagtataaccaatcagatgtgagacatgcaaatgaggt
atgataatgaggttctgtaaggtactgagagtataaccaatcagatgagg
aacatgcaaatgaggcttagtgcataaccaatccgggtgtgagacacgcc
cctcctaggcctataaaagcagcaccagttctgggctcgaggtcttttcg
cctctacaatcaagctctcccaataaatgtgtgcagaaggatcctgttgc
agcgtcgttcttcctggccagtcgagcgcacgcaagatggactcgcccag
ttcttaggcctagtctctttaactgccaatctgaagtctgtcacagagtg
aacctagccttctcaagctatgtaagatccagtccactagcaaagatccg
tgcatgggcatgttgataaataaagagccaggtacagtagcacaggcctt
tgatccctgcactgaggaggcagaggcaggtggatctcagtgagttcaag
gtcagcctggtctacagagtgagttccaggcctgctagcactacctacca
agacctttatgcttgaagacaataaaaaggagggaatagctgggcgtgtg
gcacacgcctttaatcccagcacttgggagacgagcagtcagatttctga
gtcgaggccagctggtctacaaagtgagtcaggacagccagggctacaga
agaacctgctctcgtactataagcatatat
gaattccaggtgttagtggcagcttctgccaggcttcacatcctagtcaa
tgctacagaggctgcgggagtgttttggtaccttgtgtgtttatgtgttt
aaattggacctctcctgtagcccagtctggcccccaactacctatgtaga
caaggattgcccttgaacttctgatcctcctgcctctgattctcaagagc
tcggattccaggcactggtgctgagaatcaatctcggggttttgtgcgtg
cttggcaagagctctaccagcctagctatgtccccagcccactaagagtg
gaaggtgttttgttttgtttttttccagacagggtttctctttgtagccc
tggctgtcctggaactcactctgtagaccaggctggcctcaaactcagaa
atccgactgcctctgcctcccaagagctgggattaaaggcatgtgccacc
actgcccaacaagagtggaaatcttaagcagagtgctgatactgtctgtc
agatttggagggcatggccagcagttctgagaaaagagcaagaagcccct
gggaagaaacaagtgctgagagcccccccccacacacacacaccttgatc
tgagttacagtgtggggtccccagggcagacctgaggcccactcaagcca
agctgacagagctatgtcatctgtttggacatggtggctgagggaggttg
ggacaggtgactaggagtcccaatccctgcctggaatataagtaggaaga
agagacctcaaggaagagataatgaacttgaccttgggtccttgactctt
ccagagcctgtgaaatcacaggaggggggaacatggatgtagaccaggct
agcatcctctccatgggtgatggctaaacgctggggactaaacatggtaa
gacaagatacagggatgttggttcagaggggcacatctgtgagaaggcag
gaagggtgagcaagtgagaactggagagagaggaggctggcagcacctgg
gagtcaacagaggaccccagaggagtccactgttcttgacgtgttgactt
gtgacttgagcctacattataaggacggaccagttacatgactaggttat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28908643_28909747
seq2: B6Ng01-344M10.g_67_1166

seq1  GAATTCCAGGTGTTAGTGGCAGCTTCTGCCAGGCTTCACATCCTAGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTTAGTGGCAGCTTCTGCCAGGCTTCACATCCTAGTCAA  50

seq1  TGCTACAGAGGCTGCGGGAGTGTTTTGGTACCTTGTGTGTTTATGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGAGGCTGCGGGAGTGTTTTGGTACCTTGTGTGTTTATGTGTTT  100

seq1  AAATTGGACCTCTCCTGTAGCCCAGTCTGGCCCCCAACTACCTATGTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGACCTCTCCTGTAGCCCAGTCTGGCCCCCAACTACCTATGTAGA  150

seq1  CAAGGATTGCCCTTGAACTTCTGATCCTCCTGCCTCTGATTCTCAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATTGCCCTTGAACTTCTGATCCTCCTGCCTCTGATTCTCAAGAGC  200

seq1  TCGGATTCCAGGCACTGGTGCTGAGAATCAATCTCGGGGTTTTGTGCGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATTCCAGGCACTGGTGCTGAGAATCAATCTCGGGGTTTTGTGCGTG  250

seq1  CTTGGCAAGAGCTCTACCAGCCTAGCTATGTCCCCAGCCCACTAAGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAGAGCTCTACCAGCCTAGCTATGTCCCCAGCCCACTAAGAGTG  300

seq1  GAAGGTGTTTTGTTTTGTTTTTTTCCAGACAGGGTTTCTCTTTGTAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGTTTTGTTTTGTTTTTTTCCAGACAGGGTTTCTCTTTGTAGCCC  350

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  400

seq1  ATCCGACTGCCTCTGCCTCCCAAGAGCTGGGATTAAAGGCATGTGCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGACTGCCTCTGCCTCCCAAGAGCTGGGATTAAAGGCATGTGCCACC  450

seq1  ACTGCCCAACAAGAGTGGAAATCTTAAGCAGAGTGCTGATACTGTCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAACAAGAGTGGAAATCTTAAGCAGAGTGCTGATACTGTCTGTC  500

seq1  AGATTTGGAGGGCATGGCCAGCAGTTCTGAGAAAAGAGCAAGAAGCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGAGGGCATGGCCAGCAGTTCTGAGAAAAGAGCAAGAAGCCCCT  550

seq1  GGGAAGAAACAAGTGCTGAGAGCCCCCCCCCACACACACACACCTTGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAACAAGTGCTGAGAGCCCCCCCCCACACACACACACCTTGATC  600

seq1  TGAGTTACAGTGTGGGGTCCCCAGGGCAGACCTGAGGCCCACTCAAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGTGTGGGGTCCCCAGGGCAGACCTGAGGCCCACTCAAGCCA  650

seq1  AGCTGACAGAGCTATGTCATCTGTTTGGACATGGTGGCTGAGGGAGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGAGCTATGTCATCTGTTTGGACATGGTGGCTGAGGGAGGTTG  700

seq1  GGACAGGTGACTAGGAGTCCCAATCCCTGCCTGGAATATAAGTAGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGACTAGGAGTCCCAATCCCTGCCTGGAATATAAGTAGGAAGA  750

seq1  AGAGACCTCAAGGAAGAGATAATGAACTTGACCTTGGGTCCTTGACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTCAAGGAAGAGATAATGAACTTGACCTTGGGTCCTTGACTCTT  800

seq1  CCAGAGCCTGTGAAATCACAGGAGGGGGGAACATGGATGTAGACCAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTGTGAAATCACAGGAGGGGGGAACATGGATGTAGACCAGGCT  850

seq1  AGCATCCTCTCCATGGGTGATGGCTAAACGCTGGGGACTAAACATGGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTCTCCATGGGTGATGGCTAAACGCTGGGGACTAAACATGGTAA  900

seq1  GACAAGATACAAGGATGTTGGTCCAGA-GGGCACATCTGTGAGAAGGCAG  949
      ||||||||||| |||||||||| |||| ||||||||||||||||||||||
seq2  GACAAGATACAGGGATGTTGGTTCAGAGGGGCACATCTGTGAGAAGGCAG  950

seq1  GAAGGGTGAGCAGGTGAGAACTGGAGAGAGAGGAGGGCTGGCAGGCACCT  999
      |||||||||||| ||||||||||||||||||||| |||||||| ||||||
seq2  GAAGGGTGAGCAAGTGAGAACTGGAGAGAGAGGA-GGCTGGCA-GCACCT  998

seq1  GGGAGTCAACAGAAGGACACACAGGAGGAGT-CACTGTTCTTGACGTGGT  1048
      |||||||||||| ||||| | || ||||||| |||||||||||||||| |
seq2  GGGAGTCAACAG-AGGAC-CCCA-GAGGAGTCCACTGTTCTTGACGTGTT  1045

seq1  GAC-TGTGACCTTGAGCCCAACATATTAGGACAGACACAGGTACCATGAC  1097
      ||| ||||| |||||||| |   ||| ||||| ||| ||| || ||||||
seq2  GACTTGTGA-CTTGAGCCTACATTATAAGGACGGAC-CAGTTA-CATGAC  1092

seq1  TAGGTTAT  1105
      ||||||||
seq2  TAGGTTAT  1100