BAC Information

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BAC

Clone NameB6Ng01-346E06
Chromosome17 (Build37)
Map Location 80,608,637 - 80,741,179
singlet/doubletdoublet
Overlap gene4930560E09Rik, Gemin6, Dhx57, Morn2
Upstream geneLOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7
Downstream geneSos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346E06.bB6Ng01-346E06.g
ACCGA128210GA128211
length8781,176
definitionB6Ng01-346E06.b B6Ng01-346E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,608,637 - 80,609,509)(80,739,994 - 80,741,179)
sequence
gaattctctcggtacaccaggctagcctggaactcagagagacccacctg
cctctgtctcttgagtgctgggattaaatgtgtatgccaccatgcccagc
ctctagatttgagtttaaatgaatctacttgggtcaacacatattctaac
atttgctaatataagctattgagtgattattattatgccacagttgttaa
atcttggctattgggggctggtgagatggctcagtgggtaagagcacccg
actgctcttccgaaggtcaggagttcaaatcccagcaaccacatggtggc
tcacaaccatccgatcctgagatatgactccctcttctggagtgtctgaa
gacagctacagtgtacttacatataataaataaataaataaataaataaa
taaatctaaaaaaaaatcttggctattaccacattaaagttgggggttat
ggctaagacaggaaaataattagaggccagcctgggttacatagtattat
agtattataatcctatgatctgcataggaaaaaccctatctttgaattta
gaacaacaaaaaaaggaaggcagagtattcataatctttttacatcaatt
tttttgttttgtttggtttggttttttgagacagggtttctctgcgcagt
tctggctatcctggaactcactctgtagaccaggctggtcttgaactcag
aaatccacctgcctctgcctcccaagtgctgggattacaggcgtgtgcca
ccactgcccagcccaatttttaatatttatcttcatttattaaatgaaaa
gagttgaacagttgtttttttgttggtggttgttttgttttattgaacag
gtatcttgcctgtaaactcttcctacat
gaattccagtatcactgctggctgctttgacggttgctgacacagagata
actcttacaacaataaccgaggctcaggcctggatgtctatgaccttggg
tggagtctcactccttgcaaatattttccgggggactcacaaacaaacta
ttagctttttttttttttaaagcagtgtggtatacacacatatgtttgag
catataggttcaggggcatcttgccatgatacatgccagctcattttctg
ttttgtatgaagcagtctttcctgtgttccccctggataaccgagtctcg
gggatctgtgctacaggggaccccccctccaaactccccatgggagcatt
gcaattataggtatgagccatgcctggctttggcacggtgtctggggttc
taaatgcaggctgccatggtttcgtgacaggtgattcccgaggagcgatc
tcctcagcctctgcgctctggagtccttccttcttaattgccatcctgtt
ggatgaaccttgggaaatagcctgtgatctcattggaattcttagaataa
cttcagaagtcaccaaatcctgtctgaaagcattataaagacagcagcga
gtggctgagaagcccacacccatactttggggttcaccatactttcttcc
tgggcatgcctctcttaacccttgtgtttaaaatcatatcgccatctctg
tcattgacctccaactctgccccacactggcttttcctgaaattctttcc
cacagttcggccaaggacccagctttgcctgaagaggtctctgataactt
caggtgtctgaggaagatggctggagttgcgcctctgtgtcttcgccact
gatattttcattacacagaaaactgggcaataaaaggtgagacttggcct
aggtctccttccttcacctgccatggaaacaacaggtccttctgtgctat
aagcaggaatcaggggcttagtcaaattgcagagactctggtgggttttg
tttcgcctcctgccctcatctttgcttcttcgagattcttgtttaaggtg
ggctttgttttgagacagaagctcactcttgctgctgcactcttagatct
gttttattgaccatgcgatgccagctgcctttgacttctgatcttctgac
ttgcttccagctttctgggtgctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80608637_80609509
seq2: B6Ng01-346E06.b_45_922

seq1  GAATTCTCTCGGTACACCAGGCTAGCCTGGAACTCAGAGAGACCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGGTACACCAGGCTAGCCTGGAACTCAGAGAGACCCACCTG  50

seq1  CCTCTGTCTCTTGAGTGCTGGGATTAAATGTGTATGCCACCATGCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTCTTGAGTGCTGGGATTAAATGTGTATGCCACCATGCCCAGC  100

seq1  CTCTAGATTTGAGTTTAAATGAATCTACTTGGGTCAACACATATTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGATTTGAGTTTAAATGAATCTACTTGGGTCAACACATATTCTAAC  150

seq1  ATTTGCTAATATAAGCTATTGAGTGATTATTATTATGCCACAGTTGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAATATAAGCTATTGAGTGATTATTATTATGCCACAGTTGTTAA  200

seq1  ATCTTGGCTATTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTATTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCG  250

seq1  ACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGC  300

seq1  TCACAACCATCCGATCCTGAGATATGACTCCCTCTTCTGGAGTGTCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCCGATCCTGAGATATGACTCCCTCTTCTGGAGTGTCTGAA  350

seq1  GACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAGTGTACTTACATATAATAAATAAATAAATAAATAAATAAA  400

seq1  TAAATCTAAAAAAAAATCTTGGCTATTACCACATTAAAGTTGGGGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAAAAAAAAATCTTGGCTATTACCACATTAAAGTTGGGGGTTAT  450

seq1  GGCTAAGACAGGAAAATAATTAGAGGCCAGCCTGGGTTACATAGTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACAGGAAAATAATTAGAGGCCAGCCTGGGTTACATAGTATTAT  500

seq1  AGTATTATAATCCTATGATCTGCATAGGAAAAACCCTATCTTTGAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATAATCCTATGATCTGCATAGGAAAAACCCTATCTTTGAATTTA  550

seq1  GAACAACAAAAAAAGGAAGGCAGAGTATTCATAATCTTTTTACATCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAAAAAAAGGAAGGCAGAGTATTCATAATCTTTTTACATCAATT  600

seq1  TTTTTGTTTTGTTTGGTTTGGTTTTTTGAGACAGGGTTTCTCTGCGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTGGTTTGGTTTTTTGAGACAGGGTTTCTCTGCGCAGT  650

seq1  TCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGTCTTGAACTCAG  700

seq1  AAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCGTGTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTACAGGCGTGTGCCA  750

seq1  CCACTGCCCAGCCCAATTTTTAAAATTTATCTTCATTTATTAAATGAAAA  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCACTGCCCAGCCCAATTTTTAATATTTATCTTCATTTATTAAATGAAAA  800

seq1  GAGTTGAACAGTTG-TTTTTTGTTGGTGG-TGTTT--GTTTATTGAAACA  846
      |||||||||||||| |||||||||||||| |||||   ||||||| ||||
seq2  GAGTTGAACAGTTGTTTTTTTGTTGGTGGTTGTTTTGTTTTATTG-AACA  849

seq1  GG-ATCTTG-CTGTAAGCTCTTCCTACAT  873
      || |||||| |||||| ||||||||||||
seq2  GGTATCTTGCCTGTAAACTCTTCCTACAT  878

seq1: chr17_80739994_80741179
seq2: B6Ng01-346E06.g_67_1242 (reverse)

seq1  CACAGCACCCAGAAAGCTGGGGAAGGCAAGGGCAAGAAGATCAGAAGTTC  50
      ||||||||||||||||||||   | ||||  |  ||||||||||||| ||
seq2  CACAGCACCCAGAAAGCTGG---AAGCAA--GTCAGAAGATCAGAAG-TC  44

seq1  AAAGCCAGCTTGCATCGCATGGTCAATAAAACAGATCTAAGAAGTGCCAG  100
      |||| ||||| |||||||||||||||||||||||||||||| |||| |||
seq2  AAAGGCAGCTGGCATCGCATGGTCAATAAAACAGATCTAAG-AGTG-CAG  92

seq1  CAGC-AGAGTGAGGCTCTGTCTCAAAACCAAAGCCCAACCTAAACAAGAA  149
      |||| ||||||||  |||||||||||| ||||||||| | ||||||||||
seq2  CAGCAAGAGTGAGCTTCTGTCTCAAAA-CAAAGCCCACCTTAAACAAGAA  141

seq1  TCTCGGAGAAGCAAAAGATGAGGGGCAGGA-GCGAAACAAAACCCACCAG  198
      ||||| |||||| |||||||| |||||||| |||||||||||||||||||
seq2  TCTCGAAGAAGC-AAAGATGA-GGGCAGGAGGCGAAACAAAACCCACCAG  189

seq1  AGTCTCTGCAATTTGACTAAGCCCCTGATTCCTGCCTTATAGCACAGAAG  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTCTCTGCAATTTGACTAAGCCCCTGATTCCTG-CTTATAGCACAGAAG  238

seq1  GACCTGTGGTTTCCATGGCAGGTGAAGGAAGGAGACCTAGGCCAAGTCTC  298
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTTGTTTCCATGGCAGGTGAAGGAAGGAGACCTAGGCCAAGTCTC  288

seq1  ACCTTTTATTGCCCAGTTTTCTGTGTAATGAAAATATCAGTGGCGAAGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTATTGCCCAGTTTTCTGTGTAATGAAAATATCAGTGGCGAAGAC  338

seq1  ACAGAGGCGCAACTCCAGCCATCTTCCTCAGACACCTGAAGTTATCAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGCGCAACTCCAGCCATCTTCCTCAGACACCTGAAGTTATCAGAG  388

seq1  ACCTCTTCAGGCAAAGCTGGGTCCTTGGCCGAACTGTGGGAAAGAATTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCAGGCAAAGCTGGGTCCTTGGCCGAACTGTGGGAAAGAATTTC  438

seq1  AGGAAAAGCCAGTGTGGGGCAGAGTTGGAGGTCAATGACAGAGATGGCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGCCAGTGTGGGGCAGAGTTGGAGGTCAATGACAGAGATGGCGA  488

seq1  TATGATTTTAAACACAAGGGTTAAGAGAGGCATGCCCAGGAAGAAAGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTTAAACACAAGGGTTAAGAGAGGCATGCCCAGGAAGAAAGTAT  538

seq1  GGTGAACCCCAAAGTATGGGTGTGGGCTTCTCAGCCACTCGCTGCTGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACCCCAAAGTATGGGTGTGGGCTTCTCAGCCACTCGCTGCTGTCT  588

seq1  TTATAATGCTTTCAGACAGGATTTGGTGACTTCTGAAGTTATTCTAAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCTTTCAGACAGGATTTGGTGACTTCTGAAGTTATTCTAAGAA  638

seq1  TTCCAATGAGATCACAGGCTATTTCCCAAGGTTCATCCAACAGGATGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATGAGATCACAGGCTATTTCCCAAGGTTCATCCAACAGGATGGCA  688

seq1  ATTAAGAAGGAAGGACTCCAGAGCGCAGAGGCTGAGGAGATCGCTCCTCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGGAAGGACTCCAGAGCGCAGAGGCTGAGGAGATCGCTCCTCG  738

seq1  GGAATCACCTGTCACGAAACCATGGCAGCCTGCATTTAGAACCCCAGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACCTGTCACGAAACCATGGCAGCCTGCATTTAGAACCCCAGACA  788

seq1  CCGTGCCAAAGCCAGGCATGGCTCATACCTATAATTGCAATGCTCCCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCAAAGCCAGGCATGGCTCATACCTATAATTGCAATGCTCCCATG  838

seq1  GGGAGTTTGGAGGGGGGGTCCCCTGTAGCACAGATCCCCGAGACTCGGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGGAGGGGGGGTCCCCTGTAGCACAGATCCCCGAGACTCGGTT  888

seq1  ATCCAGGGGGAACACAGGAAAGACTGCTTCATACAAAACAGAAAATGAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGGGAACACAGGAAAGACTGCTTCATACAAAACAGAAAATGAGC  938

seq1  TGGCATGTATCATGGCAAGATGCCCCTGAACCTATATGCTCAAACATATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTATCATGGCAAGATGCCCCTGAACCTATATGCTCAAACATATG  988

seq1  TGTGTATACCACACTGCTTTAAAAAAAAAAAAAGCTAATAGTTTGTTTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATACCACACTGCTTTAAAAAAAAAAAAAGCTAATAGTTTGTTTGT  1038

seq1  GAGTCCCCCGGAAAATATTTGCAAGGAGTGAGACTCCACCCAAGGTCATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCCGGAAAATATTTGCAAGGAGTGAGACTCCACCCAAGGTCATA  1088

seq1  GACATCCAGGCCTGAGCCTCGGTTATTGTTGTAAGAGTTATCTCTGTGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAGGCCTGAGCCTCGGTTATTGTTGTAAGAGTTATCTCTGTGTC  1138

seq1  AGCAACCGTCAAAGCAGCCAGCAGTGATACTGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGTCAAAGCAGCCAGCAGTGATACTGGAATTC  1176