BAC Information

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BAC

Clone NameB6Ng01-348P18
Chromosome17 (Build37)2 (Build37)
Map Location 5,851,146 - 5,851,567106,437,678 - 106,438,798
singlet/doubletsingletsinglet
Overlap geneSnx9
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352
Downstream geneLOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348P18.bB6Ng01-348P18.g
ACCGA130105GA130106
length6801,116
definitionB6Ng01-348P18.b B6Ng01-348P18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,851,146 - 5,851,567)(106,437,678 - 106,438,798)
sequence
gaattctctgtttagctctgtaatacattttttaattgggtcatttgggt
tgttggtgtctaacccctagagttctttataaattttggatattagccct
ctgtcagatgtacggttgttgaagaacctttaccaatctgtagactgcca
ttttgtcctagtgacagtgttctttgttttatagaaggtttgcaatttca
caaagtcccatttttcaattgttgatcttgaagcctgagccattttttgt
tctgttcagaaagttgtctcctgtatcagcgcattcaaggctattttcca
ctttctcttcagtgaaatttagtgtatacagttttatgttgagggtctta
atccacttgaacttgaatgttgtgcaggctgataaatatggatctatttt
cattcttgtatatgtagaaatccagttagaccatttcttgaaggtgctat
cttcttttcattggctattttggcttctttatcaaaaatcaagtgttcat
aggtgtgtgggtttatttctgggtcctcgatttgatttcattgatcaacc
tatctgtttctgtactaataccatgcagtttttaatcactattcctctgt
catagagcttgagatcggggagggtggttcctcaagaatatctctctctc
tctctctctctctctctctctctctctctc
gaattctcttgaaaatggtgccattgctattctctattgattcatgcaat
ggactctgacccagggaatctttcatgttaacaaagaattgtgatggcaa
ttttgatagcagaggtttactgcactctaaatttcagacttagcaacagt
gaaaccaactattagcctcagaatttaaattaatatctgaattgtcatct
ttcatacaggaaccctgtactggcatatcttagagtctgaatacttccag
gtcttcatcttgaggttttctttactcttaaagtccactctgaacacatc
aacttttaacagatagccagaactcttctcagtattagtgttgtattatt
tcccctaccaatatgaaaaaatgtaatcggtttttataatattgtacaag
cttgccttacttagcataaacggaaggaagctggatagaacttagatgtc
atgttagcttggacccactctgagttctaaaggtgggaaatggctaagag
acaaatgatttccagttactacatgtcaatataaacctcaaatgtttcaa
aggaggaagaagggaaagaattataatgtgaaactttagtagatcttgta
agaactcaagaaaaatctgaaacgtgaacctttgttagcagttaaaattg
acatatttattcatgaattcacctaagttatttgtaaaattaaaggcaaa
ctgccatgaccatttcctggtacaatttacttcaacaatattcttctagt
ctctctattaaaaaaagattgcattttattttttactattttattatgtg
catatgtgttatagagattgtgtctccatgtgtatgtatgtgcatgtgaa
tgtgttagctgtagaggctcagaagagggtcctaagattttctctggagc
tggagttataggaggttggggatcaaaatgccatgggttcaaggaactga
acttggggcctttctgcagagcagtttgcatatttttaccccttactatt
tccagtacctagtctctaaacaacttgctgatgttattatatttttccaa
ttacataactgcgtgtaatgataattaaccaaatatcaatttctcattcc
ttggttctgcaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_5851146_5851567
seq2: B6Ng01-348P18.b_689_729 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||          
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT---------  41

seq1  TGGCAGTGTGAGTGCCTGAGAGAGATGGCAGAGTGTGTGTGTGTGTGTGT  100
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  150
                                                        
seq2  --------------------------------------------------  41

seq1  GAGAGAGAGAAAGAGATGGCAGTGTACGTGTGTGAGAGAGATGGCAGTGT  200
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGCCTGAGAGAGATGGCAGAGTGTGTGTGTGAGAGAGATGGCAGTAT  250
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGTGAGAGAGATGGTTGTGTGTGTGTGAGAGAGATGGTTGTGTGTAT  300
                                                        
seq2  --------------------------------------------------  41

seq1  ATGAGAGAGATGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAG  350
                                                        
seq2  --------------------------------------------------  41

seq1  AGAGAGAGAGGGCAGTGTATGTGTGTGAGAGAGATGGCAGAGTGTGTGTG  400
                                                        
seq2  --------------------------------------------------  41

seq1  TGTGTGAGAGAGAGAGAGAGAT  422
                            
seq2  ----------------------  41

seq1: chr2_106437678_106438798
seq2: B6Ng01-348P18.g_70_1185 (reverse)

seq1  TCAGTTGCAGAAACAAGGGTATGAGAAATTGATTATTTTGGTTTAAATTA  50
      |||||||||||| ||| || |||||||||||||   |||||||  |||||
seq2  TCAGTTGCAGAACCAA-GGAATGAGAAATTGAT--ATTTGGTT--AATTA  45

seq1  TCATTACAACGCAGTAATGTTAATGGGAAAAATTATAATAACATCAGCAA  100
      ||||||| ||||||| ||| |||| ||||||| |||||||||||||||||
seq2  TCATTAC-ACGCAGTTATG-TAATTGGAAAAA-TATAATAACATCAGCAA  92

seq1  AGTGTTTAGAGACTAGGTACTTGGGAAATAGGTAAGGGGT-AAAATATGC  149
        |||||||||||||||||||  ||||||| ||||||||| |||||||||
seq2  GTTGTTTAGAGACTAGGTACT--GGAAATA-GTAAGGGGTAAAAATATGC  139

seq1  AAACTGCTCTTGCAGAA--GGCCCAAGTTCAGTTCCTTGAACCCATGGCA  197
      ||||||||| |||||||  | |||||||||||||||||||||||||||||
seq2  AAACTGCTC-TGCAGAAAGGCCCCAAGTTCAGTTCCTTGAACCCATGGCA  188

seq1  -TTTGGTCCCCAACCTCCTATAACTCCAGCTCCAG-GGGAATCTTAGG-C  244
       |||| ||||||||||||||||||||||||||||| |  ||||||||| |
seq2  TTTTGATCCCCAACCTCCTATAACTCCAGCTCCAGAGAAAATCTTAGGAC  238

seq1  CCTCTTCTG-GCCTCTACAGCTAACACATTCACATGCACATACATACACA  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGAGCCTCTACAGCTAACACATTCACATGCACATACATACACA  288

seq1  TGGAGACACAATCTCTATAACACATATGCACATAATAAAATAGTAAAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACACAATCTCTATAACACATATGCACATAATAAAATAGTAAAAAA  338

seq1  TAAAATGCAATCTTTTTTTAATAGAGAGACTAGAAGAATATTGTTGAAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCAATCTTTTTTTAATAGAGAGACTAGAAGAATATTGTTGAAGT  388

seq1  AAATTGTACCAGGAAATGGTCATGGCAGTTTGCCTTTAATTTTACAAATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTACCAGGAAATGGTCATGGCAGTTTGCCTTTAATTTTACAAATA  438

seq1  ACTTAGGTGAATTCATGAATAAATATGTCAATTTTAACTGCTAACAAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTGAATTCATGAATAAATATGTCAATTTTAACTGCTAACAAAGG  488

seq1  TTCACGTTTCAGATTTTTCTTGAGTTCTTACAAGATCTACTAAAGTTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTTCAGATTTTTCTTGAGTTCTTACAAGATCTACTAAAGTTTCA  538

seq1  CATTATAATTCTTTCCCTTCTTCCTCCTTTGAAACATTTGAGGTTTATAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATTCTTTCCCTTCTTCCTCCTTTGAAACATTTGAGGTTTATAT  588

seq1  TGACATGTAGTAACTGGAAATCATTTGTCTCTTAGCCATTTCCCACCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTAGTAACTGGAAATCATTTGTCTCTTAGCCATTTCCCACCTTT  638

seq1  AGAACTCAGAGTGGGTCCAAGCTAACATGACATCTAAGTTCTATCCAGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGAGTGGGTCCAAGCTAACATGACATCTAAGTTCTATCCAGCT  688

seq1  TCCTTCCGTTTATGCTAAGTAAGGCAAGCTTGTACAATATTATAAAAACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCGTTTATGCTAAGTAAGGCAAGCTTGTACAATATTATAAAAACC  738

seq1  GATTACATTTTTTCATATTGGTAGGGGAAATAATACAACACTAATACTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATTTTTTCATATTGGTAGGGGAAATAATACAACACTAATACTGA  788

seq1  GAAGAGTTCTGGCTATCTGTTAAAAGTTGATGTGTTCAGAGTGGACTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTCTGGCTATCTGTTAAAAGTTGATGTGTTCAGAGTGGACTTTA  838

seq1  AGAGTAAAGAAAACCTCAAGATGAAGACCTGGAAGTATTCAGACTCTAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGAAAACCTCAAGATGAAGACCTGGAAGTATTCAGACTCTAAG  888

seq1  ATATGCCAGTACAGGGTTCCTGTATGAAAGATGACAATTCAGATATTAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCAGTACAGGGTTCCTGTATGAAAGATGACAATTCAGATATTAAT  938

seq1  TTAAATTCTGAGGCTAATAGTTGGTTTCACTGTTGCTAAGTCTGAAATTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTGAGGCTAATAGTTGGTTTCACTGTTGCTAAGTCTGAAATTT  988

seq1  AGAGTGCAGTAAACCTCTGCTATCAAAATTGCCATCACAATTCTTTGTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAGTAAACCTCTGCTATCAAAATTGCCATCACAATTCTTTGTTA  1038

seq1  ACATGAAAGATTCCCTGGGTCAGAGTCCATTGCATGAATCAATAGAGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGATTCCCTGGGTCAGAGTCCATTGCATGAATCAATAGAGAAT  1088

seq1  AGCAATGGCACCATTTTCAAGAGAATTC  1121
      ||||||||||||||||||||||||||||
seq2  AGCAATGGCACCATTTTCAAGAGAATTC  1116