BAC Information

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BAC

Clone NameB6Ng01-349F24
Chromosome17 (Build37)
Map Location 21,551,491 - 21,671,271
singlet/doubletdoublet
Overlap geneZfp54, Zfp51, Zfp53, LOC100042508
Upstream geneEG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik
Downstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F24.bB6Ng01-349F24.g
ACCGA130386GA130387
length1,0021,040
definitionB6Ng01-349F24.b B6Ng01-349F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,551,491 - 21,552,346)(21,670,228 - 21,671,271)
sequence
gaattctgttcaaaacaaatgtgatatcttctgaagatgaaaaagttaca
aaaagaatccaaatagaaattataaaactgaaagctaaagacactaaaaa
atgcagatggaaaaaaagggcagtcattgtatctggagaaactgctaaat
tctcaataatggacccactcttaattgtataccgtgacagaaaccaaaac
tgtgtagccctctatgtcctgaaaaggaagataaaaatccctttttggac
agaggtccagtctttctcaccttagtgtactttcttatttcaccaaggtt
accttgtgtaaaaacgttcatctgcagcaaaggtgtctattttttttttc
ctccaatttttttattaggcatttacttcatttacatttcaagtgctatc
ccgaaagtcccctgtaacctctcccacccccgctcccttacccaccaact
cccacttcttggccctgttgttcccctgaactggggcatacaaaatttgc
aagaccaaggggcctctcttcccaataatggccgactaggccatcttctg
ctaaaactgcagctagagacacaagctctgggggatattggttagttcat
attgttctacctatagggtttcagactgcttcagctccttgggtactttc
tctagcacctccattgggggccctgtgttctatccaatagctgactgtga
aagttcacttctgtgtttgccaggaactggcttagcctcacaagagacag
ctatatcaggatcctttcagcaaaatcttgctggcgtatgcaatagtgtc
tgcgtttggtggcagattatgggatagaccccgggtggaaaagtgtttgg
atggtccatcctttggtatcatctccaaactaggtctctttaactccttc
catgggtattttgttgccaattctaagaaggggataattgtcacactttg
ctcatccttcttcttgagtttcatgtgtttgcaaatgtatctgggtattc
ta
gaattccaagtctagagttctctagactccatacaactactgcaatcagt
aaccaagagcagctgtccttgcctgcactggccccacacaagaccacggt
caatctaggaaagggaaaaggctttacctctcaggcattggcaatggata
gactgtagaagaagaatcactggctttagttgtcatcctgtgctgagcac
atcaggctcctgaacatagcttcaaacccacagtctcacaaatggctctg
gttcatcttagtgggtgccaggcaatatgaatagacatgaacaaagtgac
tgttggaactgtggaccaggatagcagagaggtaggagtgagaatgggca
gtatttgaagtgggcacagaaacacacaatgctgtgatatacatgcattt
tatctttgtgtgtgtgtatgtgtgaaataactaataataaaaaaatcggg
gcattcattcatggtagacaaggtttctctgtgtgaacctgtgcttaaag
gcccgtgataacatacctagatcaattaaaaaaaaatcagtgtgtaattt
cttcttagttctaacagtatctgatggatttttttttttttttttttttt
cagttttgagggccaagatggccttgaattcactgagatcagcagttcct
gactctggaatgctaggattaaaggcatgctccaacatgtcaggtttatt
cattatctggcttagtatcagataatagagtcaggaagtcttgatatttt
tgtgtgtgtcaagaagtattaaatattagtctatttgctgctcttcaagt
cctgatagaattctgtcaatttggtcctgggctttgtttgaagatgtcat
tttataattgattcagtcatattgctctcttagtcttgtttataatattt
gttcatgtcatttatatttggtatgttatatgtgcctgaaaactcataca
cctcaactagaatatcctctcttaggtacaatagatgtcttcagtgtcag
tagaatagagatccactgtaactcatttctattcagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21551491_21552346
seq2: B6Ng01-349F24.b_45_900

seq1  GAATTCTGTTCAAAACAAATGTGATATCTTCTGAAGATGAAAAAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCAAAACAAATGTGATATCTTCTGAAGATGAAAAAGTTACA  50

seq1  AAAAGAATCCAAATAGAAATTATAAAACTGAAAGCTAAAGACACTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCCAAATAGAAATTATAAAACTGAAAGCTAAAGACACTAAAAA  100

seq1  ATGCAGATGGAAAAAAAGGGCAGTCATTGTATCTGGAGAAACTGCTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATGGAAAAAAAGGGCAGTCATTGTATCTGGAGAAACTGCTAAAT  150

seq1  TCTCAATAATGGACCCACTCTTAATTGTATACCGTGACAGAAACCAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAATGGACCCACTCTTAATTGTATACCGTGACAGAAACCAAAAC  200

seq1  TGTGTAGCCCTCTATGTCCTGAAAAGGAAGATAAAAATCCCTTTTTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTCTATGTCCTGAAAAGGAAGATAAAAATCCCTTTTTGGAC  250

seq1  AGAGGTCCAGTCTTTCTCACCTTAGTGTACTTTCTTATTTCACCAAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCAGTCTTTCTCACCTTAGTGTACTTTCTTATTTCACCAAGGTT  300

seq1  ACCTTGTGTAAAAACGTTCATCTGCAGCAAAGGTGTCTATTTTTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGTAAAAACGTTCATCTGCAGCAAAGGTGTCTATTTTTTTTTTC  350

seq1  CTCCAATTTTTTTATTAGGCATTTACTTCATTTACATTTCAAGTGCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTTTTTTATTAGGCATTTACTTCATTTACATTTCAAGTGCTATC  400

seq1  CCGAAAGTCCCCTGTAACCTCTCCCACCCCCGCTCCCTTACCCACCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGTCCCCTGTAACCTCTCCCACCCCCGCTCCCTTACCCACCAACT  450

seq1  CCCACTTCTTGGCCCTGTTGTTCCCCTGAACTGGGGCATACAAAATTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTCTTGGCCCTGTTGTTCCCCTGAACTGGGGCATACAAAATTTGC  500

seq1  AAGACCAAGGGGCCTCTCTTCCCAATAATGGCCGACTAGGCCATCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGGGGCCTCTCTTCCCAATAATGGCCGACTAGGCCATCTTCTG  550

seq1  CTAAAACTGCAGCTAGAGACACAAGCTCTGGGGGATATTGGTTAGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGCAGCTAGAGACACAAGCTCTGGGGGATATTGGTTAGTTCAT  600

seq1  ATTGTTCTACCTATAGGGTTTCAGACTGCTTCAGCTCCTTGGGTACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTACCTATAGGGTTTCAGACTGCTTCAGCTCCTTGGGTACTTTC  650

seq1  TCTAGCACCTCCATTGGGGGCCCTGTGTTCTATCCAATAGCTGACTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACCTCCATTGGGGGCCCTGTGTTCTATCCAATAGCTGACTGTGA  700

seq1  AAGTTCACTTCTGTGTTTGCCAGGAACTGGCTTAGCCTCACAAGAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACTTCTGTGTTTGCCAGGAACTGGCTTAGCCTCACAAGAGACAG  750

seq1  CTATATCAGGATCCTTTCAGCAAAATCTTGCTGGCGTATGCAATAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAGGATCCTTTCAGCAAAATCTTGCTGGCGTATGCAATAGTGTC  800

seq1  TGCGTTTGGTGGCAGATTATGGGATAGACCCCGGGTGGAAAAGTGTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTGGTGGCAGATTATGGGATAGACCCCGGGTGGAAAAGTGTTTGG  850

seq1  ATGGTC  856
      ||||||
seq2  ATGGTC  856

seq1: chr17_21670228_21671271
seq2: B6Ng01-349F24.g_65_1104 (reverse)

seq1  TTTACTTGATAGAAATGAGTTAACAAGTGGATCTTCTA-TCTACTGACAC  49
      ||||||  ||||||||||||||   |||||||| |||| |||||||||||
seq2  TTTACTGAATAGAAATGAGTTA--CAGTGGATC-TCTATTCTACTGACAC  47

seq1  TGAAGACATCTATTGTAC--TAGAGAGGATATTCTAGTTGAGGTGTATGA  97
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  TGAAGACATCTATTGTACCTAAGAGAGGATATTCTAGTTGAGGTGTATGA  97

seq1  GTTTTCAGGCACATATAACATACCAAATATAAATGACATGAAACAAATAT  147
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTTCAGGCACATATAACATACCAAATATAAATGACATG-AACAAATAT  146

seq1  TATAAACAAGACTAAGAGGAGCAATATGACTGAATCAATTATAAAATGAC  197
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATAAACAAGACTAAGA-GAGCAATATGACTGAATCAATTATAAAATGAC  195

seq1  ATCTTCAAAACAAAGCCCAGGACCAAATTGACAGAATTCTATCAGGACTT  247
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCTTC-AAACAAAGCCCAGGACCAAATTGACAGAATTCTATCAGGAC-T  243

seq1  TGAAGAGCAGCAAATAGACTAATATTTAATACTTCTTGACACACACAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGCAGCAAATAGACTAATATTTAATACTTCTTGACACACACAAAA  293

seq1  ATATCAAGACTTCCTGACTCTATTATCTGATACTAAGCCAGATAATGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGACTTCCTGACTCTATTATCTGATACTAAGCCAGATAATGAAT  343

seq1  AAACCTGACATGTTGGAGCATGCCTTTAATCCTAGCATTCCAGAGTCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACATGTTGGAGCATGCCTTTAATCCTAGCATTCCAGAGTCAGG  393

seq1  AACTGCTGATCTCAGTGAATTCAAGGCCATCTTGGCCCTCAAAACTGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGATCTCAGTGAATTCAAGGCCATCTTGGCCCTCAAAACTGAAA  443

seq1  AAAAAAAAAAAAAAAAAAATCCATCAGATACTGTTAGAACTAAGAAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAATCCATCAGATACTGTTAGAACTAAGAAGAAA  493

seq1  TTACACACTGATTTTTTTTTAATTGATCTAGGTATGTTATCACGGGCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTGATTTTTTTTTAATTGATCTAGGTATGTTATCACGGGCCTT  543

seq1  TAAGCACAGGTTCACACAGAGAAACCTTGTCTACCATGAATGAATGCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAGGTTCACACAGAGAAACCTTGTCTACCATGAATGAATGCCCC  593

seq1  GATTTTTTTATTATTAGTTATTTCACACATACACACACACAAAGATAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTATTATTAGTTATTTCACACATACACACACACAAAGATAAAA  643

seq1  TGCATGTATATCACAGCATTGTGTGTTTCTGTGCCCACTTCAAATACTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATATCACAGCATTGTGTGTTTCTGTGCCCACTTCAAATACTGC  693

seq1  CCATTCTCACTCCTACCTCTCTGCTATCCTGGTCCACAGTTCCAACAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCACTCCTACCTCTCTGCTATCCTGGTCCACAGTTCCAACAGTC  743

seq1  ACTTTGTTCATGTCTATTCATATTGCCTGGCACCCACTAAGATGAACCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTCATGTCTATTCATATTGCCTGGCACCCACTAAGATGAACCAG  793

seq1  AGCCATTTGTGAGACTGTGGGTTTGAAGCTATGTTCAGGAGCCTGATGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGTGAGACTGTGGGTTTGAAGCTATGTTCAGGAGCCTGATGTG  843

seq1  CTCAGCACAGGATGACAACTAAAGCCAGTGATTCTTCTTCTACAGTCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACAGGATGACAACTAAAGCCAGTGATTCTTCTTCTACAGTCTAT  893

seq1  CCATTGCCAATGCCTGAGAGGTAAAGCCTTTTCCCTTTCCTAGATTGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCAATGCCTGAGAGGTAAAGCCTTTTCCCTTTCCTAGATTGACC  943

seq1  GTGGTCTTGTGTGGGGCCAGTGCAGGCAAGGACAGCTGCTCTTGGTTACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTTGTGTGGGGCCAGTGCAGGCAAGGACAGCTGCTCTTGGTTACT  993

seq1  GATTGCAGTAGTTGTATGGAGTCTAGAGAACTCTAGACTTGGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAGTAGTTGTATGGAGTCTAGAGAACTCTAGACTTGGAATTC  1040