Query= MSMg01no045_h22.b1 MSMg01no045_h22.b1 CHROMAT_FILE:
MSMg01no045_h22.b1 PHD_FILE: MSMg01no045_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
(627 letters)
>mm_chr17_16566102_16567128
Length = 1027
Score = 1191 bits (616), Expect = 0.0
Identities = 622/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Plus
Query: 5 gaattcacgttctctgcagatactctgagaaaatgagattccaccttagcaaattgtgaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacgttctctgtagatactctgagaaaatgagattccaccttagcaaattgtgaa 263
Query: 65 tgattaccattatccctcttttgtagaagcaccacataattttcactgatttttcactta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgattaccattatccctcttttgtagaagcaccacataattttcactgatttttcactta 323
Query: 125 aagttgttttaagtagttttagaagtacagatatgagaatttgccattttcagactgata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagttgttttaagtagttttagaagtacagatatgagaatttgccattttcagactgata 383
Query: 185 gaatttctagataggccaaattaactcaataggaaataatggtttctaagtttaaatgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatttctagataggccaaattaactcaataggaaataatggtttctaagtttaaatgat 443
Query: 245 ttaactttttgagcaagaatgatttttagaatggcaaaaaagaaaaacaaaaaccatagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaactttttgagcaagaatgatttttagaatggcaaaaaagaaaaacaaaaaccatagg 503
Query: 305 acacacactggatagtgtttctctctagaaaatatataatttgacacaaacagcaaatag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acacacactggatagtgtttctctctagaaaatatataatttgacacaaacagcaaatag 563
Query: 365 tgaatagagaaacctttttttttttt-ctcctagagacagggtttctggctgtcctggaa 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 tgaatagagaaacctttttttttttttctcctagagacagggtttctggctgtcctggaa 623
Query: 424 ctctgtagaacaggcttgcctcgaactcagaaattcgcttgcctctgcctcccaagtgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctctgtagaacaggcttgcctcgaactcagaaattcgcttgcctctgcctcccaagtgct 683
Query: 484 gggattaaaggtgtgcaccaccactgcctggctaactcccactatatttaaaatacattt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggattaaaggtgtgcaccaccactgcctggctaactcccactatatttaaaatacattt 743
Query: 544 aaaacgtcataagaaactggaagtaaaaaatttcaaagtaaagtagactgtcctaaggaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaacgtcataagaaactggaagtaaaaaatttcaaagtaaagtagactgtcctaaggaa 803
Query: 604 aggaaagagtagggaggattccaa 627
||||||||||||||||||||||||
Sbjct: 804 aggaaagagtagggaggattccaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_h22.g1 MSMg01no045_h22.g1 CHROMAT_FILE:
MSMg01no045_h22.g1 PHD_FILE: MSMg01no045_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:28 2005
(601 letters)
>mm_chr17_16713846_16714846
Length = 1001
Score = 1116 bits (577), Expect = 0.0
Identities = 595/601 (99%)
Strand = Plus / Minus
Query: 1 tttggctcaactgattcttctgtttcagactcttgagtagctataaatacagacatgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tttggctcaactgattcttctgtttcagactcttgagtagctataaatacagacatgctc 800
Query: 61 tgcatagccagcatggtatatgtttcttctaaattacttttagcatttcagggcttgact 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgcatacccagcatggtatatgtttcttctaaattacttttagcatttcagggcttgact 740
Query: 121 cacatttcctcataaatagacagaaatggaaatcaggctttttgttccaagtcccagcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cacatttcctcataaatagacagaaatggaaatcaggctttttgttccaagtcccagcta 680
Query: 181 agccaatgatacagtaatagatgtttttgcataaattccttatggagatgtgagagacgt 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 679 agccaatgatacagtaatagatgtgtttgcataaattccttatggagatgtgagagacgt 620
Query: 241 gtgttgtacatagcaaataggaagattgaagagatatgtagatggggttaattaaatctt 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtgtagtacatagcaaataggaagattgaagagatatgtagatggggttaattaaatctt 560
Query: 301 tccaggcaatttttgaaattcttttacctgtctgggccactctagctgtgaatcatattt 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tccaggcaatttttgaaattcttttacctgtctaggccactctagctgtgaatcatattt 500
Query: 361 agtgtgtttatacacatcacccaaaatttatcaaatacttggctttagttttttgctaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtgtgtttatacacatcacccaaaatttatcaaatacttggctttagttttttgctaat 440
Query: 421 attttctgggcacaacttaattttcatattatttgagtttagtatctacctcttttaatt 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 attttctgggcacaacttaattttcatattatttgagtttagtatttacctcttttaatt 380
Query: 481 ttctgtttatattcattccttagagtttatatgttttgttacatattttcagatctattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttctgtttatattcattccttagagtttatatgttttgttacatattttcagatctattt 320
Query: 541 tcatacattattcctacatcaattttattttataatcctgtttttataaagtttatttta 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcatacattactcctacatcaattttattttataatcctgtttttataaagtttatttta 260
Query: 601 g 601
|
Sbjct: 259 g 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
