TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAATTACCATGTGCAATCTCGAAGTAAAAGCCACAGTATATTG
AAAAACTGTTATCACTTTACACGTATATTGTTGGGAGCCGCCCCCACATT
CGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAAT
AATCTGCACATGTGCCAAGGGTATTTTACCACTACATGTACTCTGCCTTT
CCCGTGGCAACAACTCGGTCATGGGCTGCAGCCAATCAGGGAGTGATGCG
TCCTAGGCGGAGAATAACTCTCCTAAAAAGGGGATGGGGTTTCCGCCATT
CTCTCTCTTACTTGCGCTTCTTGCGCTTTTGCTCTGGCGCGCTGGCGCTC
TGGCGCGCTGGCGCTCTGGCTCCTAAAGATGTAAGAGGGGCGCTTTCGTT
TTTGGGGCTGGGGGCTTGCGCTCCTGGCTCCTGAAGATGTAAGCAATAAA
GTTTTGCCGCAGAAGATTCTGGTTTGTTGTGTCTTTCCTGGCCGGTCGTG
AGAACGCGGGTAAGAGTTGGTGCTGAAATCCGGGACGAGAAAATACAAGA
AAACTCGGGACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGC
GGGTCACGGTAATAAAGGTTCCCGTAAAACAGACTGTTGA

CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTGTGAGTCCTTATGTGCCTGGGGT
ATTTGATTTGAAAAACTTTTTACTGCTGCTTCAATTGAGTTGCTTGTTAT
AGCTCTGTTAACTGGATCATCTGTCTAGAAATCACTGTGTTCTAGCTTTT
TACAAATTATTAAAATGTAGATTTACAAAATATGCCTTAATAATTAGTAT
TTTGATGGTATCTGATTTAATCTCTATCATTTCATCTCGAATATTATTAA
TTATGGTAATTTTTAATGTTCATTTTATCTTAGCAAGTGTTTGGCTTGCT
CTGATTTGCCCACAAAAATGTATCTTATCTTTTATGTGCTATCATTCTGA
TGTTCCAATGCCATTTAAATGTCCAAAGTCTCTTCTATGCTGTTAATACC
TTTGCACCAGTGTTAAATCTGAGACATGGATGGTACTACAGAATTGTCCA
CATATCAGGTTTTTCTCTCAATTAGGATCCAATTCGCACATGTATAGCTA
GTGGAATATAATCTATAATTCCTAGGAAACTTTGGATTACCAAAGTGCAT
TTGATAGTTTGTTAGTAAGATTTTTAGATGTAGTAGACCAAGGAAATAGA
GTAGGGAGAAGCTAGAGAGAGGAGAGGGTAGCATAGGA

Query= MSMg01no046_b11.g1 MSMg01no046_b11.g1 CHROMAT_FILE:
MSMg01no046_b11.g1 PHD_FILE: MSMg01no046_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:11 2005
         (602 letters)



>mm_chr17_77538304_77539307
          Length = 1004

 Score = 1102 bits (570), Expect = 0.0
 Identities = 595/604 (98%), Gaps = 2/604 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattgtgagtccttatgtgcctggggtatttgatttgaaaaactttttactgctgcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aattgtgagtccttatgtgcctggggtatttgatttgaaaaactttttactgctgcttca 745

                                                                       
Query: 61  attgagttgcttgttatagctctgttaactggatcatctgtctagaaatcactgtgttct 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 attgagttgcttgttatagctctgttaaatggatcatctgtctagaaatcactgtgttct 685

                                                                       
Query: 121 agctttttacaaattattaaaatgtagatttacaaaatatgccttaataattagtatttt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 agctttttacaaattattaaaatgtagattttcaaaatatgccttaataattagtatttt 625

                                                                       
Query: 181 gatggtatctgatttaatctctatcatttcatctcgaatattattaattatggtaatttt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 gatggtatctgatttaatctctatcatttcatctagaatattattaattatggtaatttt 565

                                                                       
Query: 241 taatgttcattttatcttagcaagtgtttggcttgctctgatttgcccacaaaaatgtat 300
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 taatgttcgttttatcttagcaagtgtttggcttgctctgatttgcctacaaaaatgtat 505

                                                                       
Query: 301 cttatcttttatgtgctatcattctgatgttccaatgccatttaaatgtccaaagtctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttatcttttatgtgctatcattctgatgttccaatgccatttaaatgtccaaagtctct 445

                                                                       
Query: 361 tctatgctgttaatacctttgcaccagtgttaaatctgagacatggatggtactacagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctatgctgttaatacctttgcaccagtgttaaatctgagacatggatggtactacagaa 385

                                                                       
Query: 421 ttgtccacatatcaggtttttctctcaattaggatccaattcgcacatgtatagctagtg 480
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 tagtccacatatcaggtttttctctcaattaggatccaatacgcacatgtatagctagtg 325

                                                                       
Query: 481 gaatataatctataattcctaggaaactttggattaccaaagtgcatttgatagtttgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatataatctataattcctaggaaactttggattaccaaagtgcatttgatagtttgtt 265

                                                                       
Query: 541 agtaagatttttagatgtagtagaccaaggaaatagagtagggagaagct--agagagag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 264 agtaagatttttagatgtagtagaccaaggaaatagagtagggagaagctggagagagag 205

               
Query: 599 gaga 602
           ||||
Sbjct: 204 gaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1004
Length adjustment: 10
Effective length of query: 592
Effective length of database: 994
Effective search space:   588448
Effective search space used:   588448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)