BAC Information

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BAC

Clone NameMSMg01-046E04
Chromosome17 (Build37)
Map Location 66,927,367 - 66,927,608
singlet/doubletsinglet
Overlap gene9130404H23Rik
Upstream geneVapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12
Downstream genePtprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046E04.T7 (MSMg01no046_e04.b1)MSMg01-046E04.TJ (MSMg01no046_e04.g1)
ACCAG276682AG276683
length677746
length of high quality
(start - end)
438 (50 - 487)241 (73 - 313)
definitionCHROMAT_FILE: MSMg01no046_e04.b1 PHD_FILE: MSMg01no046_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:23 2005CHROMAT_FILE: MSMg01no046_e04.g1 PHD_FILE: MSMg01no046_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCTATTTCAAGAGGAGCCGCGGAATTCGCAGAAATGTCGCTGAGAA
GACTACCTTGTATACAGAACTAGCCTTAAGTGTTCCCTATACAAAAAAAA
AAAAAAAAAAAAAAGGCCTGCTGTCCTGATCTGATGGCTTGTTTTTTAAA
GAGCAAGTCTCTCAGGCTAGCATGATGACTTTTTTTAAAAAAATCTCTCA
GGATGGTTTGGAGACAGAGACAGGCAGGAGGAGTTGGAGACCAGCCTGGT
CTACAGTTGAGTTCCAGGACATTCAGAGCTACACAGGATTTTCCTGTTTG
GTTAAAGAAAAGAAAAATCAAGGGGGGTGGGGATGGCAATGAATGTGTTT
GTGTATCTATCTCTACATAGCCCTACTGGCTGTCCTGGAATTTACTATGT
AGAGCAGGCTAGACACATCTGGCCTGATGGGATGTCATTTATTGTTTTAA
AGAATTATTTATTTTATTCATATGAGTACACTGTTGCTGTCTTCAGACAC
ACCAGAAGAGATCCCATTACAGATGGTTGTGAACCACCATGCCGTTGCTG
GGAATTGAACTCAGAACCTCTGGAAGAGCAATCAGTGTTCCTAACCACTG
AACCCTCTCTCCCGCCTTCTGAAGGGTAGGATATCTTTAAGAAGGAAATC
AGAAGGGACACCCGACTGACTACTTTG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGCAGCAGGGAATGGATCTAAGCATCTT
TGCTGTGGTGACAGCGCCATCTTGTGATCCTGTGCAGTATTAGGGAAGCG
ACTGCCCTGGGCATTTCTCAGTCTGTGTGCCTTCGGAATCCTCCTATGTG
AGTCTTTGAAAGCCATGTCTCCTCCTGGTGCTGTATAAGTGTGTCTAGGG
CTCTTGTGCAGCTGGAGAGGAGAGGGTGGGTTTAAGAAGTAACAAGAATC
TTCAACTCTGGGAAATCTCTCTGACTTAAGGAAAGCCACGTTCATCTGTG
TGGGGTCTACAGAAACCAATTTTATCACTAGGCTAGGGGAAAAAGCGGTC
TAGCCCTTTTCTGGTGGGGAAGAAATAANNTTCGTGAAAAGGATTAGGCC
CTTTCANGGCCTGATGCTTGTTACCTTTGGGAAAAAAAATCCCAAAAAAA
AAGGGCCGGGGCCACCCCTTTCTTTATTTTTTTTGTCTAAAACTTGTAAG
GCCATGGCCTGCCCNCCTTGAAGGAAAAATTTTTAAGCGCCCTCCCGTGG
GCGGGGATTATTTTTTTTTTTTCCTATAAAAAAAAAACGTGCCTTTTTCT
GAGGAAAACCCTTCGGGGTTTTTTTATTTTTTAATAATACCCCGCCTTAT
CTTTACCCCTGTATGCCTACTCTTATTTTTTGTTTGTGCCGCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_e04.g1 MSMg01no046_e04.g1 CHROMAT_FILE:
MSMg01no046_e04.g1 PHD_FILE: MSMg01no046_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:23 2005
         (241 letters)



>mm_chr17_66927167_66927808
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcagcaggg-aatggatctaagcatctttgctgtggtgacagcgccatcttgtgatcct 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgcagcagggaaatggatctaagcatctttgctgtggtgacagcgccatcttgtgatcct 383

                                                                       
Query: 60  gtgcagtattagggaagcgactgccctgggcatttctcagtctgtgtgccttcggaatcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgcagtattagggaagcgactgccctgggcatttctcagtctgtgtgccttcggaatcc 323

                                                                       
Query: 120 tcctatgtgagtctttgaaagccatgtctcctcctggtgctgtataagtgtgtctagggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcctatgtgagtctttgaaagccatgtctcctcctggtgctgtataagtgtgtctagggc 263

                                                                       
Query: 180 tcttgtgcagctggagaggagagggtgggtttaagaagtaacaagaatcttcaactctgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcttgtgcagctggagaggagagggtgggtttaagaagtaacaagaatcttcaactctgg 203

             
Query: 240 ga 241
           ||
Sbjct: 202 ga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)