CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTTTCTCATTTCCATGGAAAATTCACACTCCTTAAATGAAATGT
GTTTGTTTCCTGTTCAGGATGGCATGTTTTTTGTTTTTTTTTTTTGTTGT
TTTTTTTGTCCCAGTTCACTGATAGCCATTTTATTGACTTCATGCCTAAC
TGCATATCCTACGGCCATTATAATTTAAATATCCATTGCTAAAAAAAAAA
AGGGAGAGGAGGTTGAATGTCAAATTTTCCTTGTTAAAGGAAAATAGAAA
AAGGACATGCCACTACTATACTAATTCTATGACCATGATCTATACTTGGC
CATTGTCCTCATATATCACATTTGCCCTTCTGGAAAGAAAATCATTCCCA
AGAGTGTCCCCCCAATACCTGATAGTAATGTGATCACTCTTAAGAAAATA
GACTCCAAGATAATGTTGGTATATCTTGCCTATACCTTCCCAGCCTTTCC
TAAATATCTGTGTATAATAACCTCTTAAAATATCCAGGTGGATAGCCATT
TGAAAGAAAGAAAAGCAATTGAGGGAACATGATATTACATTGAATTTATT
TTCTTTCTCCTTTTTATGTGAAAACTCATTTTCTATCTGTCTCAACAACA
CATCAAATCCCTCCTTTATCTATGCATGGATACACGTATATGTTATTCTT
GG

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATGAGGCTATCTTCCCTCTCTCCCTC
CCTCTCTCCCTCCTTCCTCCCTCTCTTCCCTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTGTCTGTCTTTTATTGGTTATTTTA
TTTTTTTACATTTCAAACCGATACTTCTGCAAACACCCTATCACATTGCC
CCTCTCCTCTGCTTCTTTGAGAGTGGTCCCCACCCACCCACTCACTTCTT
CCTAACCACCATGACATTCCCCTGCACTGGGGCCCCAAGCCTTCACAGGA
CCAAGGGGCTTCTTCCCCCAGTTGATGCCAGATAAGTCAATACTCTGCTA
CATATGAAGTTGGAGTCATGGGTCACTCCATATATACTCTGGTTGGTGGT
TTAGTCCCTGGGAGCTCTGGAGTGTCTGGTTGGTTGATATTGTTGTTCTT
CCTATGGGGTTGTGAAAGCTTTCAGCTCCTTCAGTCCTCCTAACTCCTCC
ATTGGGGTCCCTGCTCTCAGTCCAATAGTTGACTGTGAGCATTCCCATCT
GTATTGNTTAGGCTCTGGCAGAGCCTCTAAGGGGACAGCTATACCAGGCT
CTTGTCAGGAATCACTTTTCCACATCTCCAATACTGTCTGGGGTTG

Query= MSMg01no046_i10.b1 MSMg01no046_i10.b1 CHROMAT_FILE:
MSMg01no046_i10.b1 PHD_FILE: MSMg01no046_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:42 2005
         (553 letters)



>mm_chr17_90120624_90121574
          Length = 951

 Score =  905 bits (468), Expect = 0.0
 Identities = 524/552 (94%), Gaps = 20/552 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcttttctcatttccatggaaaattcacactccttaaatgaaatgtgtttgtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctcttttctcatttccatggaaaattcacactccttaaatgaaatgtgtttgtt 269

                                                                       
Query: 64  tcctgttcaggatggcatgttttttgttttttttttttg--ttgttttttttgtcccagt 121
           ||||||||||||||||||||||||||||||||      |  ||  ||||||||||||| |
Sbjct: 270 tcctgttcaggatggcatgttttttgtttttt------gggtt--tttttttgtcccaat 321

                                                                       
Query: 122 tcactgatagccattttattgacttcatgcctaactgcatatcctacggccattataatt 181
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 322 tcactgatagccattttattgacttcatgcctaactgcatatcctaaggccattataatt 381

                                                                       
Query: 182 taaatatccattgctaaaaaaaaaaagggagaggaggttgaatgtcaaattttccttgtt 241
           || |||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||
Sbjct: 382 tacatatccattgctaaaaaaaaa--gggaggggaggttgaatgtcaaattttccttgtt 439

                                                                       
Query: 242 aaaggaaaatagaaaaaggacatgccactactatactaattctatgaccatgatctatac 301
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 440 aaaagaaaatagaaaaaggacatgccactactatactaattctatgaccatgat------ 493

                                                                       
Query: 302 ttggccattgtcctcatatatcacatttgcccttctggaaagaaaatcattcccaagagt 361
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 -tggccattgtcctcatatatcacatttgcccttctggaaagaaaatcattcccaagagt 552

                                                                       
Query: 362 gtccccccaatacctgatagtaatgtgatcactcttaagaaaatagactccaagataatg 421
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 553 g-ccccccaatacctgatagtaatgtgatcactcttaagaaaatagactccaagatcatg 611

                                                                       
Query: 422 ttggtatatcttgcctataccttcccagcctttcctaaatatctgtgtataataacctct 481
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 612 ttggtatatcttgcctataccttcccagcctttcctaaatatctgtgtataataacatct 671

                                                                       
Query: 482 taaaatatccaggtggatagccatttgaaagaaagaaaagcaattgagggaacatgatat 541
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 672 taaaatatccaggtggatagccatttgaaagaaagaaaagcaattgaggggacatgatat 731

                       
Query: 542 tacattgaattt 553
           ||||||||||||
Sbjct: 732 tacattgaattt 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 951
Length adjustment: 10
Effective length of query: 543
Effective length of database: 941
Effective search space:   510963
Effective search space used:   510963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)