BAC Information

Click to search

BAC

Clone NameMSMg01-046N16
Chromosome17 (Build37)
Map Location 3,800,604 - 3,976,935
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik, Ppia-ps17_26.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046N16.T7 (MSMg01no046_n16.b1)MSMg01-046N16.TJ (MSMg01no046_n16.g1)
ACCAG277130AG277131
length694694
length of high quality
(start - end)		652 (43 - 694)621 (74 - 694)
definitionCHROMAT_FILE: MSMg01no046_n16.b1 PHD_FILE: MSMg01no046_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:06 2005CHROMAT_FILE: MSMg01no046_n16.g1 PHD_FILE: MSMg01no046_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,800,604 - 3,801,252)(3,976,306 - 3,976,935)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATTCTGG
AGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATTA
GATTTAGGATTGGTAAAAATTCTTTCCCAGTCTTTAACCTGTACTTTTAC
TATGAGATAAAGATTTGATGATTTCAATATAACCCTCTTTTTTGAAACCA
AGTCCATATATCTTTGCTGATGTCATACATTTTATTTTTATCATATTGGA
TAAAACATTAAGTTTATTCCAGTACATAATGGGTTTGGGCTACCCAGTGA
TAACTTTATAAAGATGAAGGGTGTCAAGGAATACTTTCCTTGAGGCTCAG
TAGTGTTCTTTGTGTTTATAATCTGTTTCACTAGTCATTTACTCTATCAT
TCATGTCTCAAATGACATTCTACTGAAGACACTAGCAGGCTTTATCAACT
GAGACTATTGGGTTACTTTAAAGTTCCTCCTGGAAAGGCAAAATAAATGT
TTCAAATATTTCCTTTACTTAATACAATTCCAAACCAAGACTTCAAGTAA
TAACAAAGACATTAAAACTTTTAAAAATAATTTAAAGATTTTTTGTCCCT
ATAAACACATAAGTTTTCATAGATGCCAAGTGGTCCAGTTGACT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAGAAAATTGAGGTTTTTAAGACT
CAATCGGATGGAAATATCCAGGACAAGACTTAGGCACTTACTGGCAAAGT
AACTAGGATTTCACAATACTTGGGCAAGTTAATTCAAGCTGGTGCTATGG
GCAAACAGAACATGGTAACCATGGCTGGTGGCTCAAAGCTGAGTGAGTAG
TGTACACTATGATAGTTGATCTTAGCCTACTGAAATAATTGGGTGAGTGA
ATCAATGTGCCCATAGACAGTGATCCCTGAGTCTGTACCTAATAGTCATG
TTTTATAGTCTCAGCAGAGAACTCTGGCTTACAGCATAATTAATAATGAA
TAACACAGGTAGAAGTGTTATTGAGTTAGAGTTGAGATATGTTAATAGAC
ACTGAGGTGAATCTGTAATCAACTAAAGTAACCCACATTAATATATTTTA
CGTTTGCAAAGCTTAGAAAGACAAATAGCTTCAATATCTTCCGCAGCAGA
AAACGAAAAGTAGATTAATGTTTACCTAGCAATCAGCGGCCCTAATTTTC
TATTGGTCTCACTAACAGGGTATCTTCCATGAGGTCTGGACTGCAGAAGT
AGAACTGAAGTGCACAAGCCTTAAGAAAACGAACAAGTTGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_n16.b1 MSMg01no046_n16.b1 CHROMAT_FILE:
MSMg01no046_n16.b1 PHD_FILE: MSMg01no046_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:06 2005
         (652 letters)



>mm_chr17_3800400_3801452
          Length = 1053

 Score = 1208 bits (625), Expect = 0.0
 Identities = 643/649 (99%), Gaps = 1/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttagctctgtaccccatttttaatggggttatttgaattctggagttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgtaccccatttttaatggggttatttgaattctggagttca 264

                                                                       
Query: 65  gcttcttgagctctttgtatatattggatattagtcccctattagatttaggattggtaa 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 gcttcttgagctctttgtatatattggatattagttccctattagatttaggattggtaa 324

                                                                       
Query: 125 aaattctttcccagtctttaacctgtacttttactatgagataaagatttgatgatttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaattctttcccagtctttaacctgtacttttactatgagataaagatttgatgatttca 384

                                                                       
Query: 185 atataaccctcttttttgaaaccaagtccatatatctttgctgatgtcatacattttatt 244
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agataaccctcttttttaaaaccaagtccatatatctttgctgatgtcatacattttatt 444

                                                                       
Query: 245 tttatcatattggataaaacattaagtttattccagtacataatgggtttgggctaccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttatcatattggataaaacattaagtttattccagtacataatgggtttgggctaccca 504

                                                                       
Query: 305 gtgataactttataaagatgaagggtgtcaaggaatactttccttgaggctcagtagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgataactttataaagatgaagggtgtcaaggaatactttccttgaggctcagtagtgt 564

                                                                       
Query: 365 tctttgtgtttataatctgtttcactagtcatttactctatcattcatgtctcaaatgac 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctttgtgtctataatctgtttcactagtcatttactctatcattcatgtctcaaatgac 624

                                                                       
Query: 425 attctactgaagacactagcaggctttatcaactgagactattgggttactttaaagttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attctactgaagacactagcaggctttatcaactgagactattgggttactttaaagttc 684

                                                                       
Query: 485 ctcctggaaaggcaaaataaatgtttcaaatatttcctttacttaatacaattccaaacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcctggaaaggcaaaataaatgtttcaaatatttcctttacttaatacaattccaaacc 744

                                                                       
Query: 545 aagacttcaagtaataacaaagacattaaaacttttaaaaataatttaaagatttttt-g 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 aagacttcaagtaataacaaagacattaaaacttttaaaaataatttaaagatttttttg 804

                                                            
Query: 604 tccctataaacacataagttttcatagatgccaagtggtccagttgact 652
           |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 tccctataaacacataggttttcatagatgccaagtggtccagttgact 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_n16.g1 MSMg01no046_n16.g1 CHROMAT_FILE:
MSMg01no046_n16.g1 PHD_FILE: MSMg01no046_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:06 2005
         (621 letters)



>mm_chr17_3975918_3976938
          Length = 1021

 Score = 1094 bits (566), Expect = 0.0
 Identities = 610/634 (96%), Gaps = 17/634 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    tctgagaaaattgaggtttttaagactcaatcggatggaaatatccaggacaagacttag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tctgagaaaattgaggtttttaagactcaatcggatggaaatatccaggacaagacttag 959

                                                                        
Query: 61   g-----cacttactggcaaagtaactaggatttcacaatacttgggcaagttaattcaag 115
            |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  gcttcccacttactggcaaagtaactaggatttcacaatacttgggcaagttaattcaag 899

                                                                        
Query: 116  ctggtgctatgggcaaacagaacatggtaaccatggctggtggctcaaagctgagtgagt 175
            |     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  c----actacgggcaaacagaacatggtaaccatggctggtggctcaaagctgagtgagt 843

                                                                        
Query: 176  agtgtacactatg--------atagttgatcttagcctactgaaataattgggtgagtga 227
            |||||||||||||        |||||||||||||||||||| |||||||||||||| |||
Sbjct: 842  agtgtacactatgatcgagtaatagttgatcttagcctactaaaataattgggtgactga 783

                                                                        
Query: 228  atcaatgtgcccatagacagtgatccctgagtctgtacctaatagtcatgttttatagtc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  atcaatgtgcccatagacagtgatccctgagtctgtacctaatagtcatgttttatagtc 723

                                                                        
Query: 288  tcagcagagaactctggcttacagcataattaataatgaataacacaggtagaagtgtta 347
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  tcagcagagagctctggcttacagcataattaataatgaataacacaggtagaagtgtta 663

                                                                        
Query: 348  ttgagttagagttgagatatgttaatagacactgaggtgaatctgtaatcaactaaagta 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  ttgagttagagttgagatatgttaatagacactgaggtgaatctgtaatcaactaaagta 603

                                                                        
Query: 408  acccacattaatatattttacgtttgcaaagcttagaaagacaaatagcttcaatatctt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  acccacattaatatattttacgtttgcaaagcttagaaagacaaatagcttcaatatctt 543

                                                                        
Query: 468  ccgcagcagaaaacgaaaagtagattaatgtttacctagcaatcagcggccctaattttc 527
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 542  ccgcagcagaaaacgaaaagtagattaatgtttacctagcaatcagtagccctaattttc 483

                                                                        
Query: 528  tattggtctcactaacagggtatcttccatgaggtctggactgcagaagtagaactgaag 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tattggtctcactaacagggtatcttccatgaggtctggactgcagaagtagaactgaag 423

                                              
Query: 588  tgcacaagccttaagaaaacgaacaagttgaaat 621
            ||||||||||||||||||||||||||||||||||
Sbjct: 422  tgcacaagccttaagaaaacgaacaagttgaaat 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |