BAC Information

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BAC

Clone NameMSMg01-047D09
Chromosome17 (Build37)
Map Location 21,751,512 - 21,752,100
singlet/doubletsinglet
Overlap genenone
Upstream geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047D09.T7 (MSMg01no047_d09.b1)MSMg01-047D09.TJ (MSMg01no047_d09.g1)
ACCAG277379AG277380
length689736
length of high quality
(start - end)
590 (46 - 635)206 (77 - 282)
definitionCHROMAT_FILE: MSMg01no047_d09.b1 PHD_FILE: MSMg01no047_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:31 2005CHROMAT_FILE: MSMg01no047_d09.g1 PHD_FILE: MSMg01no047_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAACCAAACAAAAAAAGAGAGAGAGAGAGAGAGTCGTGGGGGGA
CCCATCCTCCATGATGCCAGGATCTCAGCCACTCAGCAGGTAGTGGCATC
TTGGAGGAAAGCTGCAGATGTGGCATGACAATAGACTTTACCTATGTCTG
AAGACTCCACCCTAGGTGGGCTAGCCTGCTGTAGCAAGACAGGTCTGAGC
AGCCTGCTCAAGGCTGGGGGAAGAGCACAATATCTGGGTAGGACTTTTCA
ATGGCTTCCTTCTTTAGAAGCTTGCATAGTGCTTCAGGTCCTGTAAAAGT
TACTCATCAGGGAGGGGTATTCATTATGTAGAACAGGCTGGCGCTGAACT
CAGAGTTCCCCTTGTTCTGCCTTTTTAGTGCTGGGGTTAAAGGCTTGCAT
AACCTTGCAAACTATATGTAACTGTCAGTGTGTCAGGACAATTACACAGA
CTACTTAATACACATAAGTGAACATGTAGATCTTATTCCTACTTATATTA
AAGACTTATTTTACCGAATTGAAAACTCTAATTTAAATAAATGAGTTCCC
AGGCCCATATAACATATGAAATTTAAACTATATAGAACAAGTCTGTCCAT
AGCCAATATCGGAGAGATAAAGCGAACCCCAGCTGTTCC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTCGG
GGTGTAATAGTGGGGTGATGGGCCAGCAACGAACCAGGAGCTGTCACGCC
ATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCAGCGCCATTT
TCCCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGTCGGTCAAGCGGGACGCAATAA
GTGGCGCCGAATAACCCGTTATCTGTCATCACCCCGGCGCAAGGAAGATC
CCTCGTTCTTTTTTTTTACTCCCCCCCCCGCCACAAATGGCTCTACTAGG
TATGTATAATCTTGAACCCCCCCAATAAAAATAATCCCTTCTGAGTGGTT
GCTCGCTGATCACACTTTTCCTTCTCTCTTCTTTTTTTTTCTTCTCCCGC
TCCTTGTTTACTGGTTTCCCACCTCTTGTTCCACACCCTACACCCTTTTT
CTTACTCTATAACTTCCAATTCCCTAACAAACCCTTTTTTATTTCCATTT
CCCTCATCTTCTTTGTCTCCTCTACTTCCTTCCCTTTTCTCTTTACTTTT
TTTTCGCCCCCCCTCGTATCAATCATTTTTTTTTTCGCTATCTTCTCCAC
AGCCAACGTTCTCCTCCTTTCTTTCTTCACTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_d09.b1 MSMg01no047_d09.b1 CHROMAT_FILE:
MSMg01no047_d09.b1 PHD_FILE: MSMg01no047_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:31 2005
         (590 letters)



>mm_chr17_21751305_21752300
          Length = 996

 Score = 1036 bits (536), Expect = 0.0
 Identities = 576/592 (97%), Gaps = 9/592 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaccaaacaaaaaaagagagagagagagagagtcgtggggggacccatcctc 64
           ||||||||||||||| ||||||| | | | | |||||||||||||| |||||||||||||
Sbjct: 208 gaattccaaaccaaa-aaaaaaa-a-aaaaaaagagagagtcgtggtgggacccatcctc 264

                                                                       
Query: 65  catgatgccaggatctcagccactcagcaggtagtggcatcttggaggaaagctgcagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgatgccaggatctcagccactcagcaggtagtggcatcttggaggaaagctgcagat 324

                                                                       
Query: 125 gtggcatgacaatagactttacctatgtctgaagactccaccctaggtgggctagcctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggcatgacaatagactttacctatgtctgaagactccaccctaggtgggctagcctgc 384

                                                                       
Query: 185 tgtagcaagacaggtctgagcagcctgctcaaggctgggggaagagcacaatatctgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtagcaagacaggtctgagcagcctgctcaaggctgggggaagagcacaatatctgggt 444

                                                                       
Query: 245 aggacttttcaatggcttccttctttagaagcttgcatagtgcttcaggtcctgtaaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggacttttcaatggcttccttctttagaagcttgcatagtgcttcaggtcctgtaaaag 504

                                                                       
Query: 305 ttactcatcagggaggggtattcattatgtagaacaggctggcgctgaactcagagttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttactcatcagggaggggtattcattatgtagaacaggctggcgctgaactcagagttcc 564

                                                                       
Query: 365 ccttgttctgcctttttagtgctggggttaaaggcttgcataaccttgcaaactatatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttgttctgcctttttagtgctggggttaaaggcttgcataaccttgcaaactatatgt 624

                                                                       
Query: 425 aactgt----cagtgtgtcaggacaattacacagactacttaatacacataagtgaacat 480
           ||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 aactgtttgtcagtgtgtcaggacaattacacaggctacttaatacacataagtgaacat 684

                                                                       
Query: 481 gtagatcttattcctacttatattaaagacttattttac--cgaattgaaaactctaatt 538
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 685 gtagatcttattcctacttatattaaagacttattttacaccgaattgaaaactctaatt 744

                                                               
Query: 539 taaataaatgagttcccaggcccatataacatatgaaatttaaactatatag 590
           |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 taaatagatgagttcccaggtccatataacatatgaaatttaaactatatag 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 996
Length adjustment: 10
Effective length of query: 580
Effective length of database: 986
Effective search space:   571880
Effective search space used:   571880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)