Query= MSMg01no047_j22.b1 MSMg01no047_j22.b1 CHROMAT_FILE:
MSMg01no047_j22.b1 PHD_FILE: MSMg01no047_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:59 2005
(625 letters)
>mm_chr17_76986702_76987727
Length = 1026
Score = 1133 bits (586), Expect = 0.0
Identities = 613/622 (98%), Gaps = 1/622 (0%)
Strand = Plus / Minus
Query: 5 gaattcactttgtatcacaggtcacacctgtcacgtgttctcacaagtggaaaaggcatg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gaattcactttgtatcacgggtcacacctgtcacgtgttctcacaagtggaaaaggcatg 767
Query: 65 aggcctctatgaagccac-ttttttttcattcatagtctttgacacagaacacactcacc 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aggcctctatgaagccactttttttttcattcatagtctttgacacagaacacactcacc 707
Query: 124 atcctaaattccacttgctaagctaatatggtaggacatttattgtgccaaacatctaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 atcctaaattccacttgctaagctaatatggtaggacatttattgtgccaaacatctaga 647
Query: 184 ccacagattgatattgatgctaaagtaatgagatacttactggattcaaaatgtattgca 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 646 ccacagattgatattgatgctaaagtaatgagatacttactgtattcaaaatgtattgca 587
Query: 244 tttcctttaataagaccactattatataggcagatgtgttaatgaaagcctagaaggtat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttcctttaataagaccactattatataggcagatgtgttaatgaaagcctagaaggtat 527
Query: 304 atcactagtataacactgaaaagtgcatttgaaatggatttgaaagaccctgttagagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atcactagtataacactgaaaagtgcatttgaaatggatttgaaagaccctgttagagca 467
Query: 364 gatgaactttggaaacactccagacttatctgaatcccctgcatcacagtaattctcaaa 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gatgaactttggaaacacttcagacttatctgaatcccctgcatcacagtaattctcaaa 407
Query: 424 ttgtcctgtgagagaatgcacaaggtaggatatacattctgggtgttaatattctgccca 483
||||||| |||||||||||||| ||||||||||| |||||| ||| ||||||||||||||
Sbjct: 406 ttgtcctttgagagaatgcacagggtaggatatatattctgagtgataatattctgccca 347
Query: 484 cagtataccaggaatatgtgtatgacgctgttttaggagacaggattgttcttaggagga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cagtataccaggaatatgtgtatgacgctgttttaggagacaggattgttcttaggagga 287
Query: 544 agtggctccaacatgaccagcctcactctgcctatctccctacagtttcacagacttctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agtggctccaacatgaccagcctcactctgcctatctccctacagtttcacagacttctc 227
Query: 604 ctagcagagcatgagataagtg 625
||||||||||||||||||||||
Sbjct: 226 ctagcagagcatgagataagtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_j22.g1 MSMg01no047_j22.g1 CHROMAT_FILE:
MSMg01no047_j22.g1 PHD_FILE: MSMg01no047_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:59 2005
(543 letters)
>mm_chr17_76887114_76888056
Length = 943
Score = 942 bits (487), Expect = 0.0
Identities = 526/543 (96%), Gaps = 9/543 (1%)
Strand = Plus / Plus
Query: 1 tataccctctagaagagacacatgaatcattagagccaaagacacatgtgcaagaacata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tataccctctagaagagacacatgaatcattagagccaaagacacatgtgcaagcacata 260
Query: 61 aggtttccccagataaacaaaatcaacgaaagtaatcctaaagcaacctttatttgagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtttccccagataaacaaaatcaacgaaagtaatcctaaagcaacctttatttgagta 320
Query: 121 attgagaaacaatgtggcagtttctattttattctgcccttattgcatttattgtattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgagaaacaatgtggcagtttctattttattctgcccttattgcatttattgtattat 380
Query: 181 acaagtgctggtaacaagagaacatgtgaacaaaggaaaacctgtagctttgcaaactgg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagtgctggcaacaagagaacatgtgaacaaaggaaaacctgtagctttgcaaactgg 440
Query: 241 ctttcattgtaaggagtatggaagaacatactccagatgtgatcctctcagcaacagcaa 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctttcattgtaaggagtatggaagaacatacttcagatgtgatcctctcagcaacagcaa 500
Query: 301 ccttcagaaatgatataaaaaagggaaagctatctttgttctatgatactaccagatatc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttcagaagtgatataaaaaagggaaagctatctttgttctatgatactaccagatatc 560
Query: 361 atgtgcaaattgatgatctcttctcctgctgtctgtgaaggacaaggagcattctgctgc 420
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 561 atgtgcaaattaatgatctcttctcctgctgtctgtgaaggacaaggaacattctgcttc 620
Query: 421 agggatatagatggctgcagattcacagttgagaaagagagacatagaaggttccctgac 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 agggatatagatggctgcagatt-------gagaaagagagacatagaaggttccctgac 673
Query: 481 tgtatcccattccccaaccacccaaaaagtagcaaactaaacaggatgccattgaagaga 540
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 674 -g-atcccattccccaaccacccaaaaagtagcaacctaaacaggatgccattgaagaga 731
Query: 541 cgt 543
|||
Sbjct: 732 cgt 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
