BAC Information

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BAC

Clone NameMSMg01-047M02
Chromosome17 (Build37)
Map Location 68,504,755 - 68,505,044
singlet/doubletsinglet
Overlap genenone
Upstream genePtprm, Lrrc30, Lama1, Arhgap28
Downstream geneD930040M24Rik, EG622645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047M02.T7 (MSMg01no047_m02.b1)MSMg01-047M02.TJ (MSMg01no047_m02.g1)
ACCAG277710AG277711
length691724
length of high quality
(start - end)
294 (36 - 329)286 (57 - 342)
definitionCHROMAT_FILE: MSMg01no047_m02.b1 PHD_FILE: MSMg01no047_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:09 2005CHROMAT_FILE: MSMg01no047_m02.g1 PHD_FILE: MSMg01no047_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAG
TGTCAAACATGAAGACGGGTCTGGGGACCATGAATGAAGAAACCACGCTC
TAGAACAGCTTCAATAATTTCCACATGTACCATGGCATCTCCCCTTCTTC
CCGCAACACACACACACAGACCTGAGTGCACACACCTTTGCCATCGGCAC
CCAGGCACACATGAAAGTGGGTCAGCTCTTTTCCCACAGAATCTCTGGTT
GCTGCTACAAATGGGGCACATGATTTTTGCTGGCAAATGTGGAGGGCAGT
GATTATTTTCTCAGGAAGAAAAGCTTAGATAAAATGCTATGTTTTCCTCT
GTTTTTAACACAAATGACAAAGCTTTTAGAAAAGCAAGATGCTTAACTCA
GGATAGCCAATCTCACGTTAGCGTAACAGCCTTATGCAGATTCTGCTTGT
GCCAGACTTTTTCCAACAGGCACAGACTATCACTTCACACACTCTCCCAG
GCGGACTCTCTCCACATTTCCTGAAGGAGATACGTGTGGCAGAAAAGCGG
TCCACAAGACTTTTTCACATAGATCTGAGTTTTTGAACCTCTCCTTGATC
ATTCTTTGAATGATTTGAGAAATTGTGCAGTGTGCTGTATGATATTGGAG
GCTTCCTCCTTATCTTTTGCGGGATAAACTCACGATCCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGACTCCCCAACTGTTTTCAAAGTTACAGTAGGCAGGACAGTTT
GGTCTCAGCATAAAGATAGACACAGACGAAATAAATAGAAGGAGGACTCA
AAATTCAACAATCCATTTGTGGGAAATTAATTTTCCATGGTGTAAAAACT
ATTCATGGGGAGATTTCAGTCTTTTCACTAAATGCGCTAAGACAAATGGG
CATCCTGTACTATTGCACTATTGAGTATTTAGACAGAATGAGTTTGGTGG
CCCCCAGCCTTAAAAGCAAGGGCTGAAGCCATTTAAACCTCGGAGTCATA
CTGAGGCGCAAGTCCTTATGGACTTGGTGGATGNTGAGAGTTTCTTCGGT
ATGGCACGATAGGTGTAAGAAACTTATAGAATGGAAAGTACGCCATGTGG
ATTAAATCCAAGCTAAAACCCTCTATGCTTCAAATTATACTCAGTAAAGA
GGAAGGACAGCCTATTTTTGGGCAATAATTATATATTCCAATGCGTCTTG
AAATAACCCATATTAGAAGCTTATTAAGAAAAAAGAAAAACCTTCTTAAT
AACCTCATTTACTTCTGAACTTTTATGTAATGCTACCACTCTTTTTACCC
TCCTATTTTCCTCACCCTTTTCTGGTTTATAAACTAATTGGTTTTATAAG
GGACCTCAATTACCCTCCTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_m02.b1 MSMg01no047_m02.b1 CHROMAT_FILE:
MSMg01no047_m02.b1 PHD_FILE: MSMg01no047_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:09 2005
         (294 letters)



>mm_chr17_68504551_68505244
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcagtgtcaaacatgaagacgggtctggggaccatgaatgaagaaaccacgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcagtgtcaaacatgaagacgggtctggggaccatgaatgaagaaaccacgct 264

                                                                       
Query: 65  ctagaacagcttcaataatttccacatgtaccatggcatctccccttcttcccgcaacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagaacagcttcaataatttccacatgtaccatggcatctccccttcttcccgcaacac 324

                                                                       
Query: 125 acacacacagacctgagtgcacacacctttgccatcggcacccaggcacacatgaaagtg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 acacacacagacctgagtgcacacacctttgccatcggcacccaggcacacaagaaagtg 384

                                                                       
Query: 185 ggtcagctcttttcccacagaatctctggttgctgctacaaatggggcacatgatttttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcagctcttttcccacagaatctctggttgctgctacaaatggggcacatgatttttg 444

                                                             
Query: 245 ctggcaaatgtggagggcagtgattattttctcaggaagaaaagcttaga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggcaaatgtggagggcagtgattattttctcaggaagaaaagcttaga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)