BAC Information

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BAC

Clone NameMSMg01-049A13
Chromosome17 (Build37)
Map Location 16,443,390 - 16,443,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049A13.T7 (MSMg01no049_a13.b1)MSMg01-049A13.TJ (MSMg01no049_a13.g1)
ACCAG278634AG278635
length1,1611,187
length of high quality
(start - end)		718 (82 - 799)560 (88 - 647)
definitionCHROMAT_FILE: MSMg01no049_a13.b1 PHD_FILE: MSMg01no049_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:36 2005CHROMAT_FILE: MSMg01no049_a13.g1 PHD_FILE: MSMg01no049_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCCTNNNNNGACATTGGCGCTAACACTCCTATGGGAGAGGATCCGCG
GAATTCCAGAGACTAGTAGTATACCTTAGACTTGAACAAGTTCAAACCAG
ACAAAATCCAGCACCCAGAGAAATGGTAGACACAATATCCCACCTAGGAA
TACCTAGGAATACCTAGGAAGGTATTTGCAATAGATACCTGATAAGAAAA
GAAAAATCGGATTTTATTTTTCCAATGGAGTGACATTGGTTATATAAACC
ACACTCCAGGGCAAGCACCATGCTTAAATGAGCATATATTCTATGAACAC
ATTAATGAGGATAGGAATTTTATAAATACCAGAAAGAAGGCTTGAAATGT
ACATTTTGATCAAAATTGTTTTGATGGTAGAATGGTCATTTTCCACAAAG
TTGATTCTACCAATTCATGAGCATAGGATGTCTTTCTATTTTCTAGTGTC
TTTTCTTCTTCGGAGGTTTAAACTTTTCACTGTAGAGATCCTTCATTCCT
TGGTTAGGTTTATGACCAGATGTTTTATTTTCTTTGATAATATTGTAAAC
GTGCGTGTGACCATGATCTCCTCCATGTGTTTGTTGTAGGTGTATAAAAA
AGCTATTGATTCAGGCAACTCAATTCTATAGCCTGCTACTATACTGAATG
TATCTTTTCTAGAAGTTTTCTGATAAAAATTGGAGATCTCTATGTAAGAG
CCCGTGATTCGCCAAAAAATGATACCCCAGACTTAAAAAGTATGTAAAAG
CAAAGGGCGTTTCATTCTGCAGAAGTCCAGCATGCTGCGGTCTACCATCT
TCCAAGATGGAGGCACCCCAGTGAGCTTTGCAGCCTGATTTAAGGCACCC
GAGGGGACTTTCCGGGAGGGGGAGGTAACCTGGGGACTTCCGGGGAAGGG
CTAAGTAACCTCTGGCATTTGGCTCTTTCCCCAAGGACATTTCCAAAATC
ATTGTTGGGGAAAAAATGGTCCCCCCCCGAAGAAACCATTGGTTCCTTTG
TCTCGGGCAATTTGTGTATAAAAAAATTTTTCAAGAGGCCCAAAACTTTG
CTCGGTAATTTTTTAAAAAATAATATTTTTATGCCTTTATCCTCCTTAAT
AATGTCCCTCATTTTAAACTCCCTGACATATGGATGACTACCCTTAGTTT
TCCTATATTAG

CTTCCTNTTNNNTAACAAGANAGCCGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTTGTAGACCAGGCTTGCC
TAAAACTCAGAAATCTGCCCGCCTTTGCCTTCCAAATGCTGGGATTAAAG
GCATGTGCCACCACTGCCCGGCTCACCTTGGGTTTTCTTTATTGTTTCTA
CTTCCCTTTTTAGGTCTTCGATGGTTTTGTTCAATTCCATCACCTGTTTG
ATAGTGTTTTCCTGTAATTCTTTAAGGGATTTTTGTGGATCCTCTTTAAG
GACTTCTATCTGTTTAGCAGTGTTTTCCTGTAATTCTTTAAGTACTTCTA
CCTCTTTAGCAGTGTTCTCCTGTGTTTCTTTAAGTGAGTTATTAACTCCC
TTCTTAAAGTCCTTTACCAGCCTAATGAGATATGATTTTCAATCTGAATC
TTGCTTTTCAGGTGTCTTGTTGTGTCCAAGACTGGTTGAGGTGGGAGTGC
TGGGTTTTGATGATGGTGAGCGGTCTTGCTTTCTGTTGGTAAGATTCTTA
TGTTTGCCTTTCGCCATCTGGTAATCTCTGGTGTTAGTTGTTATAGTTGT
CTTTGGTCGAAGCCTGTTCCTCCTTTGATTCTGTTAACCTCTGTCAGCAG
TCCTGGAAGCTCAGTTCTCTCCTGGATCTCAGAGATCAAAGTATTCCCTC
CAATCAAGCTCTCCTCCTGCAGGTAAAGTGCACTGAATNCTGGATCTCTT
TCAAACCTGCCTCCCGTTTGATAAGAAATACTGAATCTTAATATGTGTTG
CCTTTGTCAAATGAATGGTCACCTGATATACTTGTTTTCTAAAAAAACAC
ATTAATATTAATTATCTCTTAATTGTTCAGTTATATAAATTCCTTTTAAA
TCATTCCTTGTCCTTTTTTATATATGTGTACAAATAGTTTAAAGTATTTT
TGTCTACTTTTTTTAAATTAATATAATTTTTTAATATTTTTATTCATCAA
TATTTTCCTTTATTATTTTTAATAAATATTTTTTACTTCATATTCATATC
ATCTTTATAATTATATTTCTATATTTTTTTTATTATTACTCTTATTTTCT
ATTACTCTTAATTTCTTTTATAAATATATTTTCTATTTATTTCATATTTA
ATCTATTTCTTTACATTTTTTTATTTTCCTATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_a13.b1 MSMg01no049_a13.b1 CHROMAT_FILE:
MSMg01no049_a13.b1 PHD_FILE: MSMg01no049_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:36 2005
         (718 letters)



>mm_chr17_16443390_16444507
          Length = 1118

 Score =  764 bits (395), Expect = 0.0
 Identities = 437/451 (96%)
 Strand = Plus / Minus

                                                                       
Query: 117 aaagaaaaatcggattttatttttccaatggagtgacattggttatataaaccacactcc 176
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaagaaaaatcagattttatttttccaatggagtgacattggttatataaaccacactcc 392

                                                                       
Query: 177 agggcaagcaccatgcttaaatgagcatatattctatgaacacattaatgaggataggaa 236
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 391 agggcaagcaccatgcttaaatgagcatatattctatgagcacattaatgagggtaggaa 332

                                                                       
Query: 237 ttttataaataccagaaagaaggcttgaaatgtacattttgatcaaaattgttttgatgg 296
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttttataaataccaggaagaaggcttgaaatgtacattttgatcaaaattgttttgatgg 272

                                                                       
Query: 297 tagaatggtcattttccacaaagttgattctaccaattcatgagcataggatgtctttct 356
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 271 tagaatggtcattttccacaaagttgattccaccaattcatgagcataggatgtctttct 212

                                                                       
Query: 357 attttctagtgtcttttcttcttcggaggtttaaacttttcactgtagagatccttcatt 416
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 211 attttctagtgtcttttcttcttcagaggtttaaacttttcactgtagagatccttcatt 152

                                                                       
Query: 417 ccttggttaggtttatgaccagatgttttattttctttgataatattgtaaacgtgcgtg 476
           |||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |||
Sbjct: 151 ccttggttaggtttatgaccagatattttattttcgttgataatattgtaaaagtgagtg 92

                                                                       
Query: 477 tgaccatgatctcctccatgtgtttgttgtaggtgtataaaaaagctattgattcaggca 536
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tgaacatgatctcctccatgtgtttgttgtaggtgtataaaaaagctattgattcaggca 32

                                          
Query: 537 actcaattctatagcctgctactatactgaa 567
           |||| ||| |||||||||||||||| |||||
Sbjct: 31  actcgattttatagcctgctactatgctgaa 1



 Score = 62.6 bits (32), Expect = 1e-13
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                
Query: 84   taggaaggtatttgcaatagatacctgataagaaaa 119
            ||||||| ||||||||||||||||||||||||||||
Sbjct: 1118 taggaagatatttgcaatagatacctgataagaaaa 1083


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space:   784464
Effective search space used:   784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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