BAC Information

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BAC

Clone NameMSMg01-049F13
Chromosome17 (Build37)
Map Location 64,175,126 - 64,175,442
singlet/doubletsinglet
Overlap geneLOC668677
Upstream geneEfna5, Fbxl17, Ppia-ps17_1026.1, LOC638867
Downstream geneA930002H24Rik, Fert2, LOC669778, Pja2, LOC100043582, Man2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F13.T7 (MSMg01no049_f13.b1)MSMg01-049F13.TJ (MSMg01no049_f13.g1)
ACCAG278836AG278837
length1,2441,244
length of high quality
(start - end)
289 (124 - 412)324 (76 - 399)
definitionCHROMAT_FILE: MSMg01no049_f13.b1 PHD_FILE: MSMg01no049_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:16 2005CHROMAT_FILE: MSMg01no049_f13.g1 PHD_FILE: MSMg01no049_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTATTTTNNNTACAGTGGGCGCANTAGACTCCTATGGGAGAGGATCC
GCGGAATTCCATAAATTCATTCTTTCCCATAAAAGACCAATACTCCATTG
GTTAAATGTACCACATTGCTTTAAACAGTCCTATATCCTCTAAAGAAATA
GAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAAGACCAGATGG
GTTTAGTGCAGAGTTCTATCAGACCTTCAAACAAGATCTAATTCCAGTTC
TTCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCA
TTCTATGAAGCCACAATTACTCTGATACCTAAACCACAGAAAGATCCAAC
AAAGATAGAGAACTTCAGATCAATTTCCCTTATGAATATCGATGCAAAAA
TACTCAGTAAAATTTTTTCTAACCGAATCCAAGAACACATCAAAACAATA
ATCCATCCTGACCAAGTAGGTTTCATTCCAGGGATGCAGGGATGGTTTAA
TATACAGAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACA
AAAACCACATGACCATCTCGTTAGATGCAGAGAAAGCATTTGACAAAATC
CAACACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTTGAGGCCC
ATACCTAAACATGACAAAAGCAATCTACAGCAAACCAGTAACCAACATCA
AAGTAAATGGTGAGAAGCTGGAAGTAATCCCACTAAAATCAGGGACTAGA
CATGGCAACTCTTCAGGATAGGTGAGAGGAGAGCCTGTTCCCGTGTCTGT
GCCACTATCAACAATACTGAGCCCAGGGCATGGATGGACTGTTTCCAAAG
GAGCAGTCCTGGCCAGCTAGCTAATGCCCAGGACTGAGATCCCTAGGATC
TTCGGAAGTGTCTAGGGCTGGGCAGTAACTGTCATGTTCTGCCCCTTTTG
ATCCTAACCCTGCTGGGAAATTTTGTAACTGGGAATCAAAATCAGCCTTA
CTAGGGGAAATTTGGAAGGTCTTGATATGAGCTTTCAAAAAATTTCCAGG
TAAAGAAAAATATATTCTTAAGGCCCTGGTTTAAAAATAAAAACTGGTCT
GTCCAAACTGTCCACCTTGAAAAGTATTTGGGGGTGTGCCATAATAATTG
TACTTTCTTTGTTTTCTCGTGTTACAAATATACACCGTGTTTCCGAAATT
ACTAAGTGGTTGTAAACCTTGTGTTATGAACTGTTTGTTAATTT
TTTTTTTCGATTGGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCATTTCAAAATGTCACTGGAACATTTCAA
AGGGGCAAGGAAGTTTCTTCCAGCAGAGCTGCAGCGTTTCAGGTTTACAG
GCCACCAGTCATGCCATATGTAACTGTTCTCAGCGTGAAGAAGAGCAGTG
TGGGGAAGAGACTTTTTGACAAGGGCTAGTGACTCTCCAGAAGATGCCAG
GTTAGCCTCGCTAAGGATATTGCTTAGTACGAAAATCTATAATTGATTCT
ACTGTGTTATTGGGAATGGGTGTTTTCAGTTTGTTTTGTTAATATCCGAA
CCATTCCTTACACTGGGAATTTAAAGACAAAATTTATGACACAATTTCAC
AGAAACCCATTTATTAGTTAGAAATAAATTAATCCTACTCTCACAAAGAT
TGCAGTTGTCGCTTTGTATACATTCCCATCTTACCGCAGAGTCTGTGAAT
GTCCATTGATACCTCCCGGCCCCAACCGGTACTCTCCTATAATTTGACTG
AATGGTTCCCAGAACACACCGAGGGGCTCCATCCTTGAAGCACCCAGCTC
TCTTTCTCAGACCAAAGGAGTTGCAAGCTCTACGTTTTAGTCTGTTATTC
CCCCATGTCTATCTCACTCTTTACTCAGCATCCGTGAGTCAGTGCCTGTA
TAGTTTTCTGACTCCTAGACTCGTATTAGTTCTTCATATTATTTCTTCAT
TATCCCTATCAATTTCTCTATCTTTTTTATTTCTATTCTTATTTACCTCT
CATCTTATTCCTTGTCCTACTTTTCTTTCTGTCTTCTTTCTTTCTATTTC
TTTTGCTATCCTTTATTCTTCTTCTTTTATTTTCTTTTCCTTTCTTATTT
ATTTTGTTTTTTTTCTTCTTTTAATCTTTCTTCTATAATTTTTTTATTTT
TGTTCAATTTTAATTCTTTTATTCTTTTTTCCATTTCTTTTTTTTCCTTT
TCTATTCTTCTTTACATCTTCACTTTCTTTTTCTCTAATTTTCTTTATCT
GTTTTTCTTTTATCGATATTTTTTTATNTTTTCTCTTTCTTTATCATATT
TTTCTAATTTATTCATTTTATTTTTTTATCTTCATTTATTTTCTTTTTTT
AATTCATTGTATTCCTGCTTCTTATCTCTTTTTNCATTATTTTATTCTAT
TTCTATCTTCTTTTTTCTTACATATTTATTCCTCTCTTTGATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f13.g1 MSMg01no049_f13.g1 CHROMAT_FILE:
MSMg01no049_f13.g1 PHD_FILE: MSMg01no049_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:16 2005
         (324 letters)



>mm_chr17_64174926_64175649
          Length = 724

 Score =  588 bits (304), Expect = e-172
 Identities = 316/324 (97%), Gaps = 7/324 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaatgtcactggaacatttcaaaggggcaaggaagtttcttccagcagagctgcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaatgtcactggaacatttcaaaggggcaaggaagtttcttccagcagagctgcagc 260

                                                                       
Query: 61  gtttcaggtttacaggccaccagtcatgccatatgtaactgttctcagcgtgaagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttcaggtttacaggccaccagtcatgccatatgtaactgttctcagcgtgaagaagag 320

                                                                       
Query: 121 cagtgtggggaagagactttttgacaagggctagtgactctccagaagatgccaggttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgtggggaagagactttttgacaagggctagtgactctccagaagatgccaggttag 380

                                                                       
Query: 181 cctcgctaaggatattgcttagtacgaaaatctataattgattctactgtgttattggga 240
           |||| ||||||||||||||||||||||||||||||||||||||       ||||||||||
Sbjct: 381 cctcactaaggatattgcttagtacgaaaatctataattgatt-------gttattggga 433

                                                                       
Query: 241 atgggtgttttcagtttgttttgttaatatccgaaccattccttacactgggaatttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgggtgttttcagtttgttttgttaatatccgaaccattccttacactgggaatttaaa 493

                                   
Query: 301 gacaaaatttatgacacaatttca 324
           ||||||||||||||||||||||||
Sbjct: 494 gacaaaatttatgacacaatttca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)