BAC Information

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BAC

Clone NameMSMg01-049J05
Chromosome17 (Build37)
Map Location 24,571,941 - 24,572,213
singlet/doubletsinglet
Overlap geneDci
Upstream geneEG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1
Downstream geneDnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049J05.T7 (MSMg01no049_j05.b1)MSMg01-049J05.TJ (MSMg01no049_j05.g1)
ACCAG278982AG278983
length1,2581,255
length of high quality
(start - end)
273 (120 - 392)264 (122 - 385)
definitionCHROMAT_FILE: MSMg01no049_j05.b1 PHD_FILE: MSMg01no049_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:44 2005CHROMAT_FILE: MSMg01no049_j05.g1 PHD_FILE: MSMg01no049_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTATTATGT
AGACCAGGCTCCTTTCAAACTCAGAGACTGCCTGCCTCTGCCTCCCAAGT
GCCGTGGTTAAAGGTGCCCTACTATGCATGACTGATTCAGATGCTTCGAA
TGAGACTGGGTACAGTGGGCTTGTGGGTCATCTCTACTGTGGGTAAAGGA
TGGCAGAAGAGACAGGGCTGACAGGACAATGGCCACATGGAGTAATAACA
ACAGGAACAACAAAAAACTGGTCTTGGTGGCAAATGTCTGTAGTCTCAGC
ACTTGGAAGGTAGCAGCAGATTTAGGCTTTATTTTTAATTTTTTATTGAT
GTGTATGAGTGCTTTGTCTGCATGTGCCTAGTGCCTGCAGAAGCCATATT
ATGGTGTCGGGTCCCATGGGCATGGGGATCGGAGTTCTAGATGGTCGTGA
GAAACCTGTGGGCTCTGGGAAGTAAACCAGGCCCTCTTCCAGAGCAGCCA
GTGCTCTCACCACTGAGCCACCTCTCCAGGCCCCCGGAGGCAGATATCAT
GGGACGAAGAGTATAGCACTCTAGGTGATGCCTATAGATTTACCCTATAG
AAGGGTTCTGACCCTTCTAAGTCACATTCCCACCCTTACCTCTGGGCTCC
GTAAATATGGCCTATGTACACTTTGTCTAGTGCTGATTCCCACAAATAGT
ATCAATTCCATTTTCTCCTGTCATCAGCCCAGAGTAACAGCAGCCACCGG
AGCTGTCTGGACTGATGATCCCCATTACCTGGAAACCTACCTGGCCCCAC
GATCCCCCCAGATGAACTATTTTTCTCTCTTCATTTAGCCTGAACCTTGT
CTCCTCATTCCTGGGGGTTCTTTACCTCTGTCCCTGTCCTTTTTTCCTTA
ATACCCCCATTCATTATTATAACTTCTAAACCTTTTTTCTTGCTTGATCT
GGCCCTATTTACTAAAATCTTTTTTCCTCTTCCCTCGGGTTGGTTTTTGT
CTTCATTTTTGGTATTCTTTTTTTTAATACTCCATTTTCCCCACTNTTTC
CTCCTCTTATCTCGTACTTCCTCTTTCACTTCTCTGTCTCTTCTTCTTTC
ATTCTTCCTTTTATTTATTATTTTCATCTTTTTTCTTTCTTTCTATCTAT
TACCTTTACTTTCTTATTACCTATACATCCATATCTATTTCTTCTCTTTT
ATTAATTACTACTTTCTTATATTTTTTCACATATCTCCATATCTATCTTA
ATCTTCTG
CATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTCTTAAGCTGCAGAGATGGNTCAGAGGTTAAGAAGGTC
TGCCCTTCCGAAGGTCCCCAGTTCAATTCCCAGCAACCATCTGTAATGAG
ATCTGATACCCTCATCTGAGGTATCTGAAGACAGCTACAATGTACTTACA
AATAATAAATAATCTTTGGGCTGGAGCGAGCAGGGCAGAAGAGAAAAGTG
TCTGAAAACAGCTACAGTGCACTTACACATAAATAAATAAATCTTTAACA
AAAGGAATTCTTTTTTTTTTTTTTTGGTCTTTCGAGACAGGCTTTCTCTG
TATAGCCCTGGCTGTTCTGGAACTCACTCTGTACCCCAGGCTGCCCTTTA
ACTCAGAAACCCGCTTGCCTCTGCCTCCCCAGCGCTGGGATTAAAGGCCG
TCTGCCACCACGCCCGCCTCTACTACCCGAATTCTTATTAACACTATTTT
ACTCCTCTTCATTCAATTTTCATTTCATTATTTATGCAGTATCTTATGTA
TGAATTATGGGTCTACACACCCCCCAGCGTGTGTGTCGAAGCCGGGGAAA
CTTTCCCTGGGTTGGTCCTTTCTCTTCCTGGTACGACAGGCATCCACCAT
CATGTCTAGCTCATGACCTTGCTCCCTTTTAAAATCTTATATGGGGATCG
CAGAGATGGCTCCCCTGTTAAAATAATCGACTGCTCTTGCAGAGGTGCTG
ATTTCTATTCCCATCATTTCTTAGGGTGTTCTATAACCTTCTCAAATGAT
ATCTGACCGCTCTCTTCCGGTGTGCCTCAATATAGCTTCCATGGTCTTCT
TTCAATATAACTTCAATTATCATTCATTAACTTACCCATTTTTTGTATAT
TTTTTCCCCATCATTCTTGTTTTTTCCCTTTAATACCCCTAAATAAATTT
ATTATATTCCCTATACTTCTTTTTTCCTTATCTTTAATCCACCTCGTGGT
TTATATTTAAACTTCAATCTCGTCTCTTTGTCAATCTTCTTTTTCTTTTA
TATTTATATTATTATTTTTATTATATTATTTCACTTTCCCATAATAACCT
ATATATACCTATCTTAATTGTTTTTAACTTCTCTTACAAAATCTTACATA
ATTTTCTATTATTTTTATGTTTAATTAATATTAATATTATTATTNTCTGC
ACATATATTCATATATATTTCTCTAACATTATTCTTCTTTTTCTTATACA
TTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_j05.b1 MSMg01no049_j05.b1 CHROMAT_FILE:
MSMg01no049_j05.b1 PHD_FILE: MSMg01no049_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:44 2005
         (273 letters)



>mm_chr17_24571859_24572531
          Length = 673

 Score =  528 bits (273), Expect = e-154
 Identities = 273/273 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactatgcatgactgattcagatgcttcgaatgagactgggtacagtgggcttgtgggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tactatgcatgactgattcagatgcttcgaatgagactgggtacagtgggcttgtgggtc 296

                                                                       
Query: 61  atctctactgtgggtaaaggatggcagaagagacagggctgacaggacaatggccacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 atctctactgtgggtaaaggatggcagaagagacagggctgacaggacaatggccacatg 236

                                                                       
Query: 121 gagtaataacaacaggaacaacaaaaaactggtcttggtggcaaatgtctgtagtctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gagtaataacaacaggaacaacaaaaaactggtcttggtggcaaatgtctgtagtctcag 176

                                                                       
Query: 181 cacttggaaggtagcagcagatttaggctttatttttaattttttattgatgtgtatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cacttggaaggtagcagcagatttaggctttatttttaattttttattgatgtgtatgag 116

                                            
Query: 241 tgctttgtctgcatgtgcctagtgcctgcagaa 273
           |||||||||||||||||||||||||||||||||
Sbjct: 115 tgctttgtctgcatgtgcctagtgcctgcagaa 83


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)