BAC Information

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BAC

Clone NameMSMg01-050B11
Chromosome17 (Build37)
Map Location 23,545,535 - 23,684,220
singlet/doubletdoublet
Overlap geneEG619775, EG619788, Olfr752-ps1, EG666030
Upstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697
Downstream geneEG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050B11.T7 (MSMg01no050_b11.b1)MSMg01-050B11.TJ (MSMg01no050_b11.g1)
ACCAG279288AG279289
length1,2291,216
length of high quality
(start - end)		284 (116 - 399)300 (133 - 432)
definitionCHROMAT_FILE: MSMg01no050_b11.b1 PHD_FILE: MSMg01no050_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:47:56 2005CHROMAT_FILE: MSMg01no050_b11.g1 PHD_FILE: MSMg01no050_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:47:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(23,683,937 - 23,684,220)(23,545,535 - 23,545,830)
sequence
NNCCCCTATTGCGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
ATACACTTCCGGGTTCTCTTAAGGATTAGACTTGTCTTAGAGCCATGATG
GTAGGATCGTTCCTGTAGCTTCGTATCAACCGCACAGCCAGGGCTTGAGT
GGCCCCTTCCGTTCCCAGGAGTCACAAGGCTGGGGACAAGGTGGTGATCT
GTGAGGATGTTAGTGAGACCCCCGTTTAGGGCCCGATCGGTTCCAGAATC
TAATCATGGCGAGCATGCGTTTTCAAAGCCGCCGCAGGACACTGGATCCC
TTGCCGAACGCTAAGCTGTGGGCTTCGGAAGAACCAACCCCGAGTTGTGG
TTTCTGTGTCTGCCTCTCTGAGCTGCGCGGGTCTTCTAGGCAGAGTCTGT
TTCCCGAGTGGGTTTGGCCAAGGTACAGGATCTGCGGGTTCTATGGCTCT
CTTGTATCACTGAGCTTGCTGTGGACTGGTGTGTCAGGAACCTCTCATTC
TCGAAGTCCTAGACTCTGGCTCTACCTGGGCCAAAATTTCCTGAGTCTCC
GTCCACCATGAAACCGCGTTGTTCACACAAACTCGCTGGCTTCCCTTTCC
CGCAGGACCATGTTCTATGGTCATTCATATCGAACGCTGTCCCCCGTCTG
ACCTGTCTTGACTGCTTCGTATCTCTCTTTTCTGTTTATGTTCCTCGTTA
TCCCTATTTCCCCTTCTCTTTCTCTTGGCATTCTTTATAATAATAATCTT
GTGTTACCCGAATTTTATTGTCTATCTTGTCCTTTTTCTCCTTTTCCTCT
TTTTCCCTTACTTTTTATCTTGTTTTGTCTTTGTTGCTTTTATGTCTCTA
TCTCTTTTATTCTTTTCTTTATTTATTCTTATATGTTCCTGTTTTCTATT
TTTTTTTTCTTTCCCTTTCTTTTATTATCTCTTTTTTTTCTCCTTTTCTC
TTTTTTTTTTTCCTTTTTTTTCTTCTTTTATTTCTTTTTTTTCTTCTTTC
CTTTTTTCTTTTTTTTTATCTTTTTCCTTTTCTATACTCTTTATTTTTCT
TCCTTTCTTTCTCCTATCTATTTCCCTTTCTTGTTTTCTTGTTCTTTTTT
TTTCTTTTCTTATTTTCGTTCTCTCATTTTCTTACTTCTTTCTCTTATTA
GTAATCTTTCNTTTCTCTCTTATTGTCCATTCTCTTCTATTCTTTCTCTC
TGCTCTCTACTATTTTTCATACTTATGTC

TTTGTTATTCATGTGAGGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAGGAAAGGGATTGATCTGGAAGTGGG
ACAACATTTGTCATGTAAATAACAAAAACACCTTAATTTAAAAAAATTAG
ACTTTGAATCATGAGTCATAGAATTGACAAAATTTTTAGCTCCCAAATGG
ATGCTAGGAAGTAAACTCTGGTCCTCCCAAAGAATAGCAGTTTCCTTAAA
TGTCCTTTGTTAGAACTCACTTCTCCCTCAAAGTTTACTGTTTGAATGCT
CGCATCTTAGTGTGACTGTTCTGAAATCGCGGGACCACTTCAGTGAACTT
TAGTATGAGATCACAACCTTCCCCTGGAGTCATGCTCAGTCCTTTCCAAT
AGTATTTCTTCGCATAAGTACTCACACTGAAAAAACGCCCTACATTATGT
GATTTTTTATCCCTCGCCAAATTGTATTTGTATTTCGATTCAAACATACT
GTTCTCCTGTAGATACTAAGATGGCTTATCATTTACCAGCACATGCTGTT
CTAGGTTTGATTTTCAGCTCCTATACCAAGGTTCCCACTTCCTGTACCTT
TCGTTTTAGAAATTTTGAATTGTGTAAGCACCACTAATGCCCCTCGTCAG
AAACATATACATACTTAGACACAGATAATATACTCCATATTTCATCTCTC
ACATATTACACTTACCCCTTATTTTATACTTTCTGTATAATATATATATC
CATACTCTTGACTATAACTTTAAGCTCTCTTCCTTAAAATATATTTTAAT
GGCTTCTACATTTTCCTGACCAGTCCTTACGACGTTCAACCACTTTTGCT
TTATTTATTCTCCTACTATAAATTTCTTTTTTTTAACAAAAATTTTTTCC
TGCTAATCTTCTATTTTTTCCTTCCTTATTTTCCTTTCTCTTTTCTCTTT
TCTGTCCCTTCTTCTTAACTATTTTTCTTATCTCCTTCTTTTTCTTCCCT
ATCTTTATTTTTTTTCATCTTGGTTTTCTCCTTCCTTTTTATTTCACTCT
TTAATTTCTATATTCTCCTATCTCTCCTCTCTTTCTCTCTTGTTCTCTTT
TTAACTCCTTCCCTCCCTTTAATCGTTATCTCATATTCCTTTAATCCTCC
TCCTCATTTTTTTCTCTCTTATTCTAGTACTCCTTATATTTTCTTTCTCT
ATACTTCCCATCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_b11.b1 MSMg01no050_b11.b1 CHROMAT_FILE:
MSMg01no050_b11.b1 PHD_FILE: MSMg01no050_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:56 2005
         (284 letters)



>mm_chr17_23683737_23684420
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcttcgtatcaaccgcacagccagggcttgagtggccccttccgttcccaggagtcac 60
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 tagcttcgtatcaatcgcacagccagggcttgtgtggccccttccgttcccaggagtcac 425

                                                                       
Query: 61  aaggctggggacaaggtggtgatctgtgaggatgttagtgagacccccgtttagggcccg 120
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaggttggggacaaggtggtggtctgtgaggatgttagtgagacccccgtttagggcccg 365

                                                                       
Query: 121 atcggttccagaatctaatcatggcgagcatgcgttttcaaagccgccgcaggacactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atcggttccagaatctaatcatggcgagcatgcgttttcaaagccgccgcaggacactgg 305

                                                                       
Query: 181 atcccttgccgaacgctaagctgtgggcttcggaagaaccaaccccgagttgtggtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 304 atcccttgccgaacgctaagctgtgggcttcggaagaaccaacccggagttgtggtttct 245

                                                       
Query: 241 gtgtctgcctctctgagctgcgcgggtcttctaggcagagtctg 284
           |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 244 gtgtctgggtctctgagctgcgcgggtcttctaggcagagtctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no050_b11.g1 MSMg01no050_b11.g1 CHROMAT_FILE:
MSMg01no050_b11.g1 PHD_FILE: MSMg01no050_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:56 2005
         (300 letters)



>mm_chr17_23545335_23546034
          Length = 700

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatttaaaaaaattagactttgaatcatgagtcatagaattgacaaaatttttagctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttaatttaaaaaaattagactttgaatcatgagtcatagaattgacaaaaattttagctc 260

                                                                       
Query: 61  ccaaatggatgctaggaagtaaactctggtcctcccaaagaatagcagtttccttaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatggatgctaggaagtaaactctggtcctcccaaagaatagcagtttccttaaatg 320

                                                                       
Query: 121 tcctttgttagaactcacttctccctcaaagtttactgtttgaatgctcgcatcttagtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 321 tcctttgttagaactcacttctccctcaaagtttactgtttgaatgcttgtatcttagtg 380

                                                                       
Query: 181 tgactgttctgaaatcgcgggaccacttcagtgaactttagtatgagatcacaaccttcc 240
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactgttctgaaattgtgggaccacttcagtgaactttagtatgagatcacaaccttcc 440

                                                                   
Query: 241 cctggagtcatgctcagtcctttccaatagtatttcttcgcataagtactcacact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctggagtcatgctcagtcctttccaatagtatttcttcgcataagtactcacact 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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