Query= MSMg01no050_f05.b1 MSMg01no050_f05.b1 CHROMAT_FILE:
MSMg01no050_f05.b1 PHD_FILE: MSMg01no050_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:29 2005
(642 letters)
>mm_chr17_68504540_68505581
Length = 1042
Score = 1062 bits (549), Expect = 0.0
Identities = 605/629 (96%), Gaps = 12/629 (1%)
Strand = Plus / Plus
Query: 16 gaattcttcagtgtc-aacatgaccatta-----gtctggggaccatgaatgaagaaacc 69
||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct: 216 gaattcttcagtgtcaaacatga-----agacgggtctggggaccatgaatgaagaaacc 270
Query: 70 acgctctagaccatcttcaataatttccacatgtaccatggcatctccccttcttcccgc 129
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acgctctagaacagcttcaataatttccacatgtaccatggcatctccccttcttcccgc 330
Query: 130 aacacacacacacagacctgagtgcacacacctttgccatcggcacccaggcacacatga 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 331 aacacacacacacagacctgagtgcacacacctttgccatcggcacccaggcacacaaga 390
Query: 190 aagtgggtcagctcttttcccacagaatctctggttgctgctacaaatggggcacatgat 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aagtgggtcagctcttttcccacagaatctctggttgctgctacaaatggggcacatgat 450
Query: 250 ttttgctggcaaatgtggagggcagtgattattttctcaggaagaaaagcttagataaaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttttgctggcaaatgtggagggcagtgattattttctcaggaagaaaagcttagataaaa 510
Query: 310 tcgttatgttttcctctgtttttaacacaaatgacaaagcttttagaaaagcaagatgct 369
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 511 t-gttctgttttcctctgtttttaacacaaatgacaaagcttttagaaaaacaagatgct 569
Query: 370 taactcaggatagccaatctcacgttagcgtaacagccttatgcagattctgcttgtgcc 429
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 570 taactcaggatagccaatctcacgttagagtaacagccttatgcagattctgctcgtgcc 629
Query: 430 agactttctccaacaggcacagactatcacttcacacactctcccaggcggactctctcc 489
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agactttttccaacaggcacagactatcacttcacacactctcccaggcggactctctcc 689
Query: 490 acatttcctgaaggagatacgtgtgcgagaaaagtggtccaccagactttttcacataga 549
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 690 acacttcctgaaggagatacgtgtgggagaaaagtggtccacaagactttttcacataga 749
Query: 550 tctgagtttttgaacctctccttgatcattctttgaatgatttgagaacttgggcagtgt 609
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 750 tctgagtttttgaacctctccttcatcattctttgaatgatttgagaacttgggcagtgt 809
Query: 610 ggtgtatgagatcggtggtttcctcctta 638
|||||||||||||||||||||||||||||
Sbjct: 810 ggtgtatgagatcggtggtttcctcctta 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_f05.g1 MSMg01no050_f05.g1 CHROMAT_FILE:
MSMg01no050_f05.g1 PHD_FILE: MSMg01no050_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:29 2005
(388 letters)
>mm_chr17_68694452_68695240
Length = 789
Score = 638 bits (330), Expect = 0.0
Identities = 372/386 (96%), Gaps = 1/386 (0%)
Strand = Plus / Minus
Query: 2 tctgactccccaactgttttcaaagttacagtaggcaggaccctttggtctcagcataaa 61
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 788 tctgactccccaactgttttcaaagttacagtaggcaggacagtttggtctcagcataaa 729
Query: 62 gatagacacagacgaaataaatagaaggaggactcaaaattcaacaatccatttgtggga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 gatagacacagacgaaataaatagaaggaggactcaaaattcaacaatccattcgtggga 669
Query: 122 aattaattttccatggtgtaaaaactattcatggggagatttcagtcttttcactaaatg 181
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 668 aattaattttccacggtgtaaaaactattcatggggagatttcagtcttttcaataaatg 609
Query: 182 cgctaagacaaatgggcatcctgtactattgcactattgagtatttagacagaatgagtt 241
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 608 cgctaagacaaatgggcatcctgtactattgcactattgggtatttagacagaatgagtt 549
Query: 242 tggtggccccc-agccttaaaagcaagggctgaagccatttaaacctcggagcaaacaga 300
||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 548 tggtgaccccccagccttaaatgcaagggcggaagccatttaaacctcggagcaaacaga 489
Query: 301 ggcgcaagtccttatggacttgggttgggatgagagtttcttcggtatggcacgataggt 360
|| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 ggggcgagcccttatggacttgggttgggatgagagtttcttcggtatggcacaataggt 429
Query: 361 gcaagaaacaaatagaaaggaaagta 386
||||||||||||||||||||||||||
Sbjct: 428 gcaagaaacaaatagaaaggaaagta 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space: 295620
Effective search space used: 295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
