BAC Information

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BAC

Clone NameMSMg01-050F14
Chromosome17 (Build37)
Map Location 18,826,036 - 18,826,290
singlet/doubletsinglet
Overlap geneVmn2r-ps115
Upstream geneEG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
Downstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050F14.T7 (MSMg01no050_f14.b1)MSMg01-050F14.TJ (MSMg01no050_f14.g1)
ACCAG279454AG279455
length1,1991,244
length of high quality
(start - end)
551 (116 - 666)255 (195 - 449)
definitionCHROMAT_FILE: MSMg01no050_f14.b1 PHD_FILE: MSMg01no050_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:32 2005CHROMAT_FILE: MSMg01no050_f14.g1 PHD_FILE: MSMg01no050_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:32 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACA
ACCTCAGGCAACCCCTTTAAGTGACAATGGATACCTATCTAACAGCTGCA
TCAACCCTACCTTGACAGTCCAAGACTCAACCTCCACAGAAATATTTATA
TTCTGACTCCTTCTCAAACAGGTTACCTCAATCATTAAGAACTTAAAATA
ATTTTACTCACACAAGAAAACTTTACATAACCAATGGAGACCATGACCGT
AGTTTTCGGCTTTTAAATATTAAGAACAAACCACTTTTAACAAATGTCCA
GTTTTTAATAGCTATTTTACCATTTTAGCCCAAACTTTCAGAATTACAAA
TCTTGCTTCAATTTAGAGATTGCATTTTCTCTATTGGACATGTTCATGTT
TCCAGTATGTTTTCTGGTCCAAGGCATGGAGCTTACGATCAATTTAATTC
ATTAAAAAAATATTTTTGACGTTTTTAGGAAGGTAAATTACAAAAATCTT
ACAACATAATGAAATCACCTCTGCACTCAGAACCACTGCCCTGACAAAGT
TAAATACTATTCTTAATCAAGATCACTGTGTATTCCCTTGGTATCTTTGA
GGGTCAGCCATCCCCCAATAAGATTTATCTAGGAGACACCACATTGAAGA
AATCTGACTCTGCTTCCAGAACCTATCAAACAGCAATACATTTGCACTGT
TAGTAGAAATGTGCCACAGAGATTCAGGTATGTGAATGCCTGGGTCACAC
TGAGTGGTCTTCTAGCAGTAGCTGCGGCCTTTGCACAGTTGCTGTGTTCC
TACAAAATGGTGATTTATAAATCCAAAAAGTTCAGCTTTGTCTAGGGCCT
TCACTTTCTGCTGCTTGACGATAAAAATGGTTAAATTCTCATCTTCTTGC
CTAAAACCACTTCTTGTCTACAAATTTGAGTGCCTCCCCCCCAGGATTAA
TAGGTCTAAAACTCTGAAATGTGAAATTTGTCCCTTCTTTAAACCTATTA
TCCCCCCCCTTTTTTTCTTTTCTTTCTTCCTACACTATCTATCAACAACT
TTTGTATTCTCAAAAATCATTTTCTATCTCTGCAATTTTTTTATTTGTTC
CATAGTCTTTCCTTTTTATCTCTTTTTTTCCTATTTCCTTTTCTTTTTTA
CCTTTCCTTTTTCTTTCTACTTCCACCTATTCATACTTTTTTTCAATCT
TTTATTGACTGGAGGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAATATTGTTTAAGGGGCATGATGTAGGTT
CCTCACAGTTTCCCTGGCTTGTTAAGATTCCTATATTATTAGGGATTACA
GTAGCCCCAAATAAGGCAGTGACATTTTTATTCTATCTAGTTTGGCACTC
TTTTTGCCACTGGTACTCTTTCATGCCAGGTAGATATCCAGTTGGATTTC
TGTTCTCAGTGGGACCAGGAGCATTAAAATTTATGGGACATCCTGCCTTA
CTGAGGCAGTGTTTGCTGTCATGTCCACGCTTTTTCCCTGAATGATTTTG
TTAGCCAAACCTGATTTACTAAATATTCTGTCGGTGATTAATAAGATTAT
GGATAGTGTTGTGCCCTCCTGAGGCTTTATAATGAAAATGCTTTGAAAAT
ATGTTTTACACATCTCAGCAAAAGCCTTCAATAAATTTCAGACTTTTAAA
CCGTCTTAATCAGAGATTATCAAGTGGCTGTAGCATTTTCAAAGAACATA
TCCTTTAAAACAATATCTCTTTGCTTCGGAGCCTCTATCAGTCGAGCAAA
TGTTGTCCTTACTATATTTTTTGCTTTCTTTACTATATTAACCAGCCTTT
TGAACCTCTGGTCTCCTTTTTACGTCAGCATCTCCTTGCTCCTGGATCTG
CAGTCCCATTTTTTACTAGACCTTCCTTTGTCACTTTTTTTGTCATTTTC
TTCTTGTCTATATCCCCTGCCCTTCCCATAAATCATTCCCTATTTTAATA
ACTTCCTTCCCTTTTTTCTGAACTTTTTAAATATATTCTTTCTTTCTCCA
GTTTTCTTTTCTTTATGCTGGCTTATTACTATCTCTAATCTATCTCCTGT
ATGAGTCTTTAACTTATTTAATTTATCATGGGTTTCCATAATAAATATCC
TTCTTTTTTTTTCCCTATTTCCTCTACATTCTGGGAAACCCATTTTATAC
TCTTTTATCTCGTAGGGGTAATTTTTTTTTCATTCCTTTACGTGATTTCT
TATATCATCTTTTTTTTTTCTTCATATTTCTTCTCTTGGATAATTGATTT
TAACTTTCTATTTTTTTCGTTAATTTTTTGATCTTCTCCCATATTTCTCT
TCTACACTTATTCTAATATTTTCCTCTTTCACCTTTTACTCTTTATTTTA
TTCATTATAACCCCTCTTTGCTATTTTTTATTTTTTTATTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_f14.g1 MSMg01no050_f14.g1 CHROMAT_FILE:
MSMg01no050_f14.g1 PHD_FILE: MSMg01no050_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:32 2005
         (255 letters)



>mm_chr17_18825836_18826490
          Length = 655

 Score =  455 bits (235), Expect = e-132
 Identities = 250/255 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcactctttttgccactggtactctttcatgccaggtagatatccagttggatttctgtt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcactctttttaccactggtactctttcatgccaggtagatatccagttggatttctgtt 396

                                                                       
Query: 61  ctcagtgggaccaggagcattaaaatttatgggacatcctgccttactgaggcagtgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctcagtgggaccaggagcattaaaatttatgggacatcctgccttactgaggcagtgttt 336

                                                                       
Query: 121 gctgtcatgtccacgctttttccctgaatgattttgttagccaaacctgatttactaaat 180
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 335 gctgttatgtccacgctttttccctgaataattttgttagccaaacctgatttactaaat 276

                                                                       
Query: 181 attctgtcggtgattaataagattatggatagtgttgtgccctcctgaggctttataatg 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 275 attctgtcggtgattaataagattatggatagtgttgtggcctcctgaggttttataatg 216

                          
Query: 241 aaaatgctttgaaaa 255
           |||||||||||||||
Sbjct: 215 aaaatgctttgaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)