BAC Information

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BAC

Clone NameMSMg01-051A15
Chromosome17 (Build37)
Map Location 27,376,557 - 27,377,108
singlet/doubletsinglet
Overlap geneLOC100042713
Upstream geneItfg3, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
Downstream geneENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051A15.T7 (MSMg01no051_a15.b1)MSMg01-051A15.TJ (MSMg01no051_a15.g1)
ACCAG279932AG279933
length1,2201,445
length of high quality
(start - end)		558 (53 - 610)121 (88 - 208)
definitionCHROMAT_FILE: MSMg01no051_a15.b1 PHD_FILE: MSMg01no051_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:09 2005CHROMAT_FILE: MSMg01no051_a15.g1 PHD_FILE: MSMg01no051_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTTTTGNNNGAGCACTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTCCTTTTGTCTCTTCTTTGAGCATGACTACACGCCC
CCCCCCCCAACACCTGAACACCACCTACCCTGCTTCTCCCGGTTCTAGCA
TCTATATACCCTCTGAAAAGTTCCCAGAATTCCAAATGTCACACAAACGC
AGAAACTATCTGCAGTTGGCAAAACCACGCCTCTGCTAGAGCCTGAGGCA
AATCATAGTCAGCTGCTGCAGACAGTCTGAAGCAGCCCCAGACCCCAAAT
ACCTGCGATTAAAACAAAAACGCATTCCTATAATACTCCTGTATGTGTGT
TTTCTAAAGAAACCAAAGTCCCAGAATTCTAACTACAAGTAGTGGCCTCT
TTCTTTGCAACTCCTTAACTTATTCCTAACAGATTACACTACATCTTCTT
CCCTTCTGGGCCTCCCGGATCTTCTGGATTGAGCATCCAGACTGTGCTAG
CCCGAGAGGCCGGGCCGGGGAAGCTTTAACTATCTGCACATCGCGCAGGC
CTGCCCGAGCATGTTTCCAACAGAACCCCAGCAGCTCCACCTGGCTGGAT
CTCTGGTCTGGATGTGGACCAACCAGCTGCAGCCACGACGCAGGATCAGA
GATACAGCCTGCGGACAAAGAGGGACCAGATCTTTTAGGTCCCCCCCTCC
AGGCCCAGCTTTATACAAGCCTGTTCTCCTCTTTCCCACTGTCCCTAACC
CAGGACCACATAACCTGAGGAAAGTTGTCCCTCCCTCCTCCTGGTCCCAT
TTGCTTGTACATCCTCCACAGCCTTGTTTTACTGTTTGTGAGCCAGTGTT
TGCCTACAGCCTTCAATTCACCCTATCCTAACATATGCTTTGAACACTTG
ATTCTCCTTGCCTCACCCCCAAACGTTTGGTCATTACTTCGTGTGTTACC
ACTCTCTGGTCCTTTTTGTTCTTTTAAACTGGTACTTTGCTTATTCATTT
CTTCATTGTTCCACCTTATGGTTCCTCCTTATTCTCTGTTCTCTGGAATT
CCTTTTTTTAAATTCCTTGTCTTATTTGTCCTGACTTCTTATTTTTTCTC
TCTTTTATATTTTATTTTCCTTTCTTTATTCCCCTTTCTCCTATATTATA
TGTTTTCCTTTATTATTTTCTTCTTTTTACTTCTTTATCCCTTTTTTTTT
TTTTTCCTCTTTTTTTTTTT

CCGGTTTTTTTNTTTAGATGGNATGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTCATGTGTTGTTTTGTTGA
TAGGCAAGGGGTTGACTGCCTGTAGAGAAAAGGGGGGCTGCCAGGGGGAT
CCCAGTGTCTCTGTGGACATTTCTGTAGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGNNNNNNNNNNNNTNNTNNNNTTTTTTTTTTTTTTTTTTTTCT
TTTTTTTTTCTTTTTTTTTTTTTTTTTTCTCTTTTTTTTTTTTTTTCTNT
TTTTTTTTTTTTTTCTTTTTTTTTTTCCTTTTCTTTTTTTTTTTTTTTTT
TCTCTTTCTTTTTTTTTTTTTCTTTTTTTTTTCTCTTTTTTCTTTCTTCC
NCCTNTCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCTTCTTTTTT
TTTTTTTTTCTCCCCCCTTTTTTTTTTTCCCCCCCCCTCTTTTNTTTTTT
TTTTCTTTCTTCTTTTTTTCTCTTTTTTTTTTTCTTTTTTTCTTCTTCTC
TTTTTTTTTTTCCCTCTTTTTCTTTTTTTTTCTTTTCCCTTTTTTCTCTT
CTTTTCTCTCTTTTTTTTCTTTTTTTTTTTTCTTTTTCTCTCTCTCTCTT
TTCTTTTCTTTTTTCTTTTTTCTTTCTTCTTCTTTCTTTTTCTTTTTCTT
TTCTCTTTTCTTTCCTTTTTTCTTTTTTTTTTTTTNTTTCCTTTTTTTTT
TCTNCTTCCTCTTTTTTTTTTCTTTCTTCTNTTTTCTTTTTTTTTTCTTT
TTTTTCCTTTTTTTTCCTTTTTTCCTCTTTCTTTTTTCTTTTTTTTCTTT
CCTCCCTTTTTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCTCT
CTTTTTCNTTTCTCCTTCTTTTCTTTTTCTTTTTTTCCTTTTCTCTTTCT
TTTTCTTTTCTTTTTTCTTTCTCCTTTTCCTTCTTTTTCTTTTTTTTTTT
TTTTNTTTTTTTTCTTTTTTCTCTCTTTTCTCTTCTTTTCTTTCCTTTTT
TTCTCTTCTTTTTTTCTCTTTCTCTTTTTTTCTCTTTCTTTTTTTTTTTT
TTCTCTTTTTCTCTCTTCTTCTTTTTTTTTCTCTTTCTTTTCTTTCTTTT
TTTCTTTTCTTTTTCTTTTTTTCTTCTTTTTTTCTTTNTTTTTTTTTTTT
TTTTCCTCTCTTTCTNCTCTTCTCTTTTTTTCTTTTNTTCTTTTNTCTTC
TTCTCTTCCCCTTCTTTTTCCTTCTTCTTCCTTTTTTCTTTNCTTTCTTC
TTTTCTTCCTTTTNNTCNTCTTTTTTTTTCTTCTNCTCTTCTTCTCCTTT
TCNTTCTNTTTTTCTTCTTCTCTTCTCTCTTTTCTNCTCTTCTCCTTTTT
TCTCTCTNCNTTTTCTTNTTNTNTTTTNTCTTTTCTCTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_a15.b1 MSMg01no051_a15.b1 CHROMAT_FILE:
MSMg01no051_a15.b1 PHD_FILE: MSMg01no051_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:09 2005
         (558 letters)



>mm_chr17_27376352_27377308
          Length = 957

 Score = 1009 bits (522), Expect = 0.0
 Identities = 546/554 (98%), Gaps = 2/554 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccttttgtctcttctttgagcatgactacacgcccccccccccaacacctg 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 206 gaattctttccttttgtctcttttttgagcatgactacacgcccccccccc-aacacctg 264

                                                                       
Query: 65  aacaccacctaccctgcttctcccggttctagcatctatataccctctgaaaagttccca 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaccacctaccctgcttctccaggttctagcatctatataccctctgaaaagttccca 324

                                                                       
Query: 125 gaattccaaatgtcacacaaacgcagaaactatctgcagttggcaaaaccacgcctctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattccaaatgtcacacaaacgcagaaactatctgcagttggcaaaaccacgcctctgc 384

                                                                       
Query: 185 tagagcctgaggcaaatcatagtcagctgctgcagacagtctgaagcagccccagacccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagagcctgaggcaaatcatagtcagctgctgcagacagtctgaagcagccccagacccc 444

                                                                       
Query: 245 aaatacctgcgattaaaacaaaaacgcattcctataatactcctgtatgtgtgttttcta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatacctgcgattaaaacaaaaacgcattcctataatactcctgtatgtgtgttttcta 504

                                                                       
Query: 305 aagaaaccaaagtcccagaattctaactacaagtagtggcctctttctttgcaactcctt 364
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 505 aagaaaccaaaatcccagaattctaactacaagtagtggcctctttctttgcaactcca- 563

                                                                       
Query: 365 aacttattcctaacagattacactacatcttcttcccttctgggcctcccggatcttctg 424
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 aacttattcctaacagattacactacatcttcttcccttctgggcctcccagatcttctg 623

                                                                       
Query: 425 gattgagcatccagactgtgctagcccgagaggccgggccggggaagctttaactatctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gattgagcatccagactgtgctagcccgagaggccgggccggggaagctttaactatctg 683

                                                                       
Query: 485 cacatcgcgcaggcctgcccgagcatgtttccaacagaaccccagcagctccacctggct 544
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacatcgcgcaggcctgccagagcatgtttccaacagaaccccagcagctccacctggct 743

                         
Query: 545 ggatctctggtctg 558
           ||||||||||||||
Sbjct: 744 ggatctctggtctg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space:   518956
Effective search space used:   518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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