BAC Information

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BAC

Clone NameMSMg01-051I15
Chromosome17 (Build37)
Map Location 43,374,452 - 43,374,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770
Downstream geneGpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051I15.T7 (MSMg01no051_i15.b1)MSMg01-051I15.TJ (MSMg01no051_i15.g1)
ACCAG280266AG280267
length1,3241,513
length of high quality
(start - end)
33 (30 - 62)131 (116 - 246)
definitionCHROMAT_FILE: MSMg01no051_i15.b1 PHD_FILE: MSMg01no051_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:23 2005CHROMAT_FILE: MSMg01no051_i15.g1 PHD_FILE: MSMg01no051_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGTATATTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATT
CTGCCTCTAGGNCTTACCCTTTAAGAATTTACTATNANAAATATATTTTC
AGGNCTTTACCTTAAAGATCTTCCAATGCCCCCTCTTTGAGATAGTGAAA
AACAAGTTAGCATTTTCCTTACAAAGGGTCTGAATACTAGTATAAGAAAT
AATATTCTTAATGTGTGTCCTTAAATCAGCCTGGTTAGATATGATATAAA
TAACTTTTACAAAGGACAAAGGCTTTCTGAAATTGTGTTGAAGGTTCTTC
ATAAATCATTTGGTTTGTTAATACTGTAGTTTTTGTATAGAATTCAATGT
ATTTGATTGGTGTATTATATCATACTTGTTCTTGTTTACAAGCAATATTT
GTTTTTTTTATCGATGAGTGTCATTGCATTTTTTTGATATACTATTACTT
GGTTTTTTTATCACCCTTGTCACATACTTGTCTTTTGTTTAATAAAAATT
ATGTTCTGTTTTTCTGATTTTTTGTTATTTTTCTATTTTTTTATATTTTT
CTTGTTTTTTTTTTTTTTTGTTTTTTATTTTTTCTATTACTTTTCTTACT
TTTTTTTTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTT
TTTTTTTTTCTTCTTTTTTTTCTTATATATTATATTTTTTTTTTTTTTTT
TATTTCTGTTCCTTTTATATTTTTTTTTTTTCTTTTTTTTTTTTTTCCTT
TTTTTATTTTTTTTTTTATTTTTATTCCTATATATTTATTTTTTTTTTTA
TTCCCAATTTTATTTTTTTTTTTTTCTTCTTTTTTTTTTTTCTTTTTATT
TTTTTTTTTTTTTTTTTTCTTTTTTTATTATTTTTCTATTTTTTTTCCTT
TTTATAATATTTATTGTATTTTTTTTTTTTTTTCCTTTTCCTTATCTTTT
TTAAATTTTATTTTTTTTTTTTTTTATTTTATATTTTATTATATTTATTA
TATTTCTTTTATTTCTTTAATTTTAATTATATTTTTTTTTTTTTATTTAC
TTTTATTTTTTATTTTCTTTATCTTCATTATTTTTATTCTTTTTTTTCTT
TCGTTTTTTATTATTCATTACTTTTCCTATTTTTATTATTTTATTTGTTT
TTTTATTTATTATTCATTTTTATTTTTCTTTTTATTTTTATATTTTACTT
TTTTATATTTCTTTTATATTTTCTTATTCTTTTTTATATTTTCCTTTATT
TTTTTGTTTCTATTTTATTTTTCTTTTTTCTATTTATTATTTCCCTATTT
TTTTTTTTTCCTATTTTTTTTTTT
TTTTAAGATATGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTTGGACAGCTGTACTCCAGAAAGACACAAAT
AAACAAAGCCTTAAAATTTTTTGTCTACCGCATTTATTTTTAAAACTCCA
GCTCTATGAGAGTAGGTATCTAAGGGCCACTTGATAGATGAGAGATCGAA
TTTTCAAAAATTACTGTTGGTCAGGTATCTCTAATGGAAAACTAGGTGGT
CGAAGCTGATGGTTGAAAAGACCCTCATTTTTAGTTCAGCCAATATTTTT
ACCATGTTCTCTACGCACTTAGACACGTTCTATAAATATATAAATTATGT
CTGTTAGCCCAGATGTTGATGATTGTTATTCTTTCCTGTGACCTAAGTTT
TTTTCTTTTACCTGTCTTCTGTCCTAGCCCTTTGTTCTATGTTAGATCTA
TACCTTTATTTTTTTTCCTCTCCCTTGTTTTTTTTCTCTATTTTTTGTAA
ACAAGTAGTCACTTTTTTCTTTGTTGTTTATCTGTTGTTTATCTTATTTT
GTTCCGTTCATTTTTTTTTTTTATTTTTTTTCCCTATCTTTTTTTCTTTT
CTCTCTTTTGTCTTTCCTATTTTTTTTTTTTTTTTGACATTTAATTATTA
TTTTTTTTTTCTTTTTATTTTTTTTTTTCTTTTTACTTTCTTATTCCTTT
TTCTATTCCTTTTATTTTGTTATTTATTTATCTTATCTTTATTATTATTT
TTTTTTTTTTTCTTTCTCTTTTTCCTCTTTTTTTTGTTTCTTCTTTCTGG
ATATTTTATGTTTTTCATTTGATTTTATTTTCTACCTTTATTTTATTATA
TTTTCTTTTTTTTCTTTTTATTCTTTTTTTCTCTATATATGTTTTTTTTT
CTTTTTTTTTATTATTTTCCATATAATTTTATAATTTATCTTTTAATTCT
TTATCCTATTATTTTTTTTCTATTATTTTTTTTTTTTTTTTTATTTTTTC
CTTTATCCTTTTTTTTCTATCTTCTTTTTTTTTTTTTTATTTTTTTTTTT
TATATTTTTTCTATTATTTATTTATTAATTTTCATATTTTAATATATCTT
ATTTTCTACATTTTTTTTTATTGTATTTCTTTTTTATTTTTCTCTGTACT
CAATTTACTTCATCTATCTTTTATTCCTAATTCTACTCCTGAATAGTATC
TCTTTATATTATTCTCTCTTTCTTTCTTTATTGTTAGGCTTTCTTATATT
ATTATTCCTATCCTATTCGGTGTCATCTTACTAACTTGTCATTTTCNTAT
ATATACTGTGTATCCCTATTCTTGTCATCTTCTTATTTTTCTTCTTTATC
ATGTCTCTTACTTCTACTTTTCCTATTTTTATTATTTATTCTTCTTTCGT
CTTTTTTATCTTTTATTATATTCTCACTATATTCTTCATTCTCTATTTCT
AATTTTTATTCTTATATCTATTATTTGACTCATTTATTTATTCTATTATG
TTCTCTACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_i15.g1 MSMg01no051_i15.g1 CHROMAT_FILE:
MSMg01no051_i15.g1 PHD_FILE: MSMg01no051_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:23 2005
         (131 letters)



>mm_chr17_43374252_43374781
          Length = 530

 Score =  223 bits (115), Expect = 5e-63
 Identities = 127/131 (96%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttttgtctaccgcatttatttttaaaactccagctctatgagagtaggtatctaagg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 attttttgtctacagcatttatttttaaaactccagctctatgagagtaggtatctaagg 271

                                                                       
Query: 61  gccacttgatagatgagagatcgaattttcaaaaattactgttggtcaggtatctctaat 120
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 270 gccacttgatagatgagagatcgaattttcaaaaa-tactgttggtcaggcatctctaat 212

                      
Query: 121 ggaaaactagg 131
           |||||| ||||
Sbjct: 211 ggaaaaatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 530
Length adjustment: 8
Effective length of query: 123
Effective length of database: 522
Effective search space:    64206
Effective search space used:    64206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)