BAC Information

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BAC

Clone NameMSMg01-051O16
Chromosome17 (Build37)
Map Location 82,122,457 - 82,122,715
singlet/doubletsinglet
Overlap geneSlc8a1
Upstream geneMap4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704
Downstream geneEG668832, LOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051O16.T7 (MSMg01no051_o16.b1)MSMg01-051O16.TJ (MSMg01no051_o16.g1)
ACCAG280543AG280544
length1,3581,261
length of high quality
(start - end)
130 (132 - 261)261 (71 - 331)
definitionCHROMAT_FILE: MSMg01no051_o16.b1 PHD_FILE: MSMg01no051_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:17 2005CHROMAT_FILE: MSMg01no051_o16.g1 PHD_FILE: MSMg01no051_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTCAACCCCT
AANGGGATCCCTTTCCATGACAAGACTCATAACAGAATCAANCAACCTGC
CCTTTTGGGCCCCACCCCCCCCCTAAGAATATAAATGGATAGATCTAGGC
CTCCCCGCACATATGTAGCAGATATGCAGCTTGGTCTTGATGTGGATCCT
GAAGTATTGGAGTAAAGCTATACCCAAAACTCTTACGTGTATATGAGTTC
TCTTCTTTTAGCTGGACCACCTCTGTCTGACCTCAGTGCTAGAATACATG
CCTAACCTTGCATAGACTTGTTTTGTCTTATCGCTACCCAGGTGACTCCA
CATCACTTCACGTTATCTTGTCATCGTGCTCTTACTTCTTTTTTTTTTCT
CTCCCTCTCTCTCCTCATTCCTTTTCTTGTTTTTTTCCTTCCCCTTTCTT
TTTCCCCTCCCCCCCCTTTTTTCTTTTTCTTTCTTTCCTTTTTTAATGTT
CTTCTTTTTTCCTTTTTCTTTCTTTTTTCTTTTTTTTTTCTTTCCTTTTT
TTTCTTCACTTCTCTCCTTTTTTTCTTTTCCTCTCTCCTTCCTTTCCTCC
TTTTTTTTTCCTTTCCACTTTTCTCTTCCCCTCTCTTCCCTTTTTTTCCC
TCCTCCTTCCTTTTTATTCTCTTCTTCTTTTCCTTTCTTTCTTCTCTTTT
TCTTTTCTCTCTTTTTTCCTCCTTTTCCTTTTCTTTTTCCCTTTGTCTTT
TTTTTTTATTTTTTATTTTATTTTTTTTTCTCTTTTTTTTCTCCTTTTTT
TTATTTCCCTTCTCCCTTATCTTCTCCTCCCTTTCTCTTCCTCATTTTTC
TCCTCTTTTTCCTCTTTCCTTCTTCCTTTCTTTTTCTTTTTCTCTTTTTC
TTTTTCCTCTTTCTTCTCTCCTCTCTCCTCTTCTTCTTCCTTCACCTTTT
CTTCTCTTCTCCTTCTTCTTCCCTCCCTTCCCTTTTTCTTCTTCCCCTCC
TTCTCTTTTTTCTTTTTCTCCTATTTTTTTTTTTCTTCCCCCCTATTATG
TTCCTTTTTGTGATTTCTTCTTTTTGTTATATGTATCTTCTCCTTTCTTC
CTTCTTTCTTCTTTTATCACTCTTATCCTTTCCTTTCGTTTCTTTCCCTT
TCTTCTTCTTCGTCTCCTTTTTCCTTTTTTCTTCTTGTTTTTCTTTGCTT
CTCTTCTCTTCCCTTCCTCCCTTCCTTTCTTCTCCTCCTCTCTCTTCTCT
CTTCCTTCTCTATCCACCTTCTCTCCTCCTCTCTCTTCTTTCTCCTCACA
TCCTCCTTTCTTTCTTTTCTTCTCTCCCTCATCTCCCCCTTTTCTATTTT
TCTTTTTT
NNTTCCATGAGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTCACACCCACAACCACCTGATATCATT
TTTTTTGCACTAAATTGTCCTACTCACCGCCCATCTGATTAGAAAATAAA
GAGGCATAAGTGGAAGAAGAGTTAAGAAAAAAGTCACTGAGATTCCATCC
CAAGCTTGGCTCCTTCCTTTGGTGTCTTGCACATTCAGTAGAAGTTATTC
TGATCTGAGAGTTAGCTTTGCCTTCTGTCATGGAAAGAATCAAATGTCTC
TCCATTTATTGACCTTTAATGTGCTAGAGCTTGAACGCACATCCTTTTGA
TACTAAGGTCTATCCTTTATCCACAATGTCTTGTGACTCAGATAACAATT
TTTTTTCATGACCCTTCTCATAATCATGACTACCAGGAACACCTGTCTTT
ATTTTTTCCCCCCCCCTGGGTGTGTACTGATTCCCCTCCCGAATTGTACA
TTTTCTCGTTCCTTTATTTTTTGAGACTACTATACTATCTATTATTTTTT
CCCCTTCTTCCCTATATGATTCTCCCATGTATTCCCTCTTGTTCTCTCTT
CCTTCCTCTACCTCTTTTTCTATTATCTGTTTTTATATGTCTTTATGCTC
CTTTTTGATTTCTTTCTTTTTTTTTTCTGTTTTCCCTTGTTACAGTTTTT
TTTTTTTGTATATTTTTTTTTCTATATCTTTTTATTTCTTTTTCTTCCTT
TTTTTTTCTTTTTTTTTTTTTTCCCTATTTTCTCTTTTTTTTCTTTTTTT
TACTATCTTCTTTTTTTTTTCTCTCTTTTTTCTTTCTTTTTTCTTTATTC
TCTCTTCTTTTTTATTCTTTTTTCTATTCTCTCTTTCTCTTTTTTTTTTG
TTTTCTTTCTTTCTTTTTTTTCCCCTCCATTTTTTTTTTTTTCTTTTTCT
TCTTTTTTTTTTTTTTTTATTTTTATTTTACTTTTAATTAATTCTACTTT
TTTTCTTCTTTTTTTTTTTTTCTCTTCTTTTTCTTTCTTTTTTATTTCTA
TTTTTTCTTTTTTCTCTTTCTTTTTTTTTTCTTCATCTATTATTATTCTT
TCTCTACTTTCCTTTTTACTTTTTTTTCTTTTTTCTTTTATTTAACTTTT
TCTTTATATCTTTTATTTCCTTTTTTAATTTTTTTTCTTATCTCTTTTTT
TTGTACTTTTCTATACTCTCTTTCATTTCTTATTTTCATTTTTTTTCTAT
TTTCTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_o16.g1 MSMg01no051_o16.g1 CHROMAT_FILE:
MSMg01no051_o16.g1 PHD_FILE: MSMg01no051_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:17 2005
         (261 letters)



>mm_chr17_82122256_82122915
          Length = 660

 Score =  445 bits (230), Expect = e-129
 Identities = 254/262 (96%), Gaps = 4/262 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcacacccacaaccacctgatatca-ttttttttgcactaaattgtcctactcaccg 59
           |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 202 tttt-acacccacaaccacctgatatcatttttttttgca-taaattgtcctactcactg 259

                                                                       
Query: 60  cccatctgattagaaaataaagaggcataagtggaagaagagttaagaaaaaagtcactg 119
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 tc-atctgattagaaaataaagaggcataagtggaagaagagttaagaaaaaagtcaccg 318

                                                                       
Query: 120 agattccatcccaagcttggctccttcctttggtgtcttgcacattcagtagaagttatt 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agagtccatcccaagcttggctccttcctttggtgtcttgcacattcagtagaagttatt 378

                                                                       
Query: 180 ctgatctgagagttagctttgccttctgtcatggaaagaatcaaatgtctctccatttat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgatctgagagttagctttgccttctgtcatggaaagaatcaaatgtctctccatttat 438

                                 
Query: 240 tgacctttaatgtgctagagct 261
           ||||||||||||||||||||||
Sbjct: 439 tgacctttaatgtgctagagct 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 660
Length adjustment: 9
Effective length of query: 252
Effective length of database: 651
Effective search space:   164052
Effective search space used:   164052
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)