Query= MSMg01no052_b24.b1 MSMg01no052_b24.b1 CHROMAT_FILE:
MSMg01no052_b24.b1 PHD_FILE: MSMg01no052_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:38 2005
(524 letters)
>mm_chr17_44021607_44022530
Length = 924
Score = 787 bits (407), Expect = 0.0
Identities = 417/421 (99%), Gaps = 2/421 (0%)
Strand = Plus / Minus
Query: 104 ctggagtaaccaaacctgggaagctcagattcaatgagatgccccttctctgtaaagtga 163
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 883 ctggagtaaccaaacctgggaggctcagattcaatgagatgccccttctctgtaaagtga 824
Query: 164 agagcaattgaagagggcacccagcattaacatgtggcctccacatgcctctatatggac 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 agagcaattgaagagggcacccagcattaacatgtggcctccacatgcctctatatggac 764
Query: 224 atgagtgggcacacacacacacacacacatgcacacatacatgtaaactcttacacttga 283
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 atgagtggg--cacacacacacacacacatgcacacatacatgtaaactcttacacttga 706
Query: 284 acatgcatgcatactgcatacacttacatgcataaagagagcaagagaggtagagtgtat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acatgcatgcatactgcatacacttacatgcataaagagagcaagagaggtagagtgtat 646
Query: 344 ttggcagtcacagaagcatcagatctcgcagggagcttatgtcccacacacccatgtctc 403
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttggcagccacagaagcatcagatctcgcagggagcttatgtcccacacacccatgtctc 586
Query: 404 cctcctttcccactcataggacgtctgtcgcttgccaggaacagtgccactattttatta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cctcctttcccactcataggacgtctgtcgcttgccaggaacagtgccactattttatta 526
Query: 464 ttttccctcatagttcttacctatgtcttgttgttgtttgagtcaggaggaaacctaggg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttttccctcatagttcttacctatgtcttgttgttgtttgagtcaggaggaaacctaggg 466
Query: 524 c 524
|
Sbjct: 465 c 465
Score = 64.5 bits (33), Expect = 2e-14
Identities = 37/39 (94%), Gaps = 2/39 (5%)
Strand = Plus / Minus
Query: 62 cttcaaagcagctggcattacgtacaggctggagtacca 100
||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 cttcaaagcagctggcattacgtacaggctg--gtacca 145
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_b24.g1 MSMg01no052_b24.g1 CHROMAT_FILE:
MSMg01no052_b24.g1 PHD_FILE: MSMg01no052_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:38 2005
(550 letters)
>mm_chr17_43894222_43895171
Length = 950
Score = 1009 bits (522), Expect = 0.0
Identities = 543/550 (98%)
Strand = Plus / Plus
Query: 1 ctgcccttgggtctgaacaaacaaggaggtttcatgtttggaattccataatagcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcccttgggtctgaacaaacaaggaggtttcatgtttggaattccataatagcttttc 260
Query: 61 ttgttttctcttgtggcttctgctgtaggaggaaggaaggaagaaaagcataaaacaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttttctcttgtggcttctgctgtaggaggaaggaaggaagaaaagcataaaacaact 320
Query: 121 tagtacttaaacgccgaaggtggacggagttttgtccgctgctcatcgtaggaaagctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtacttaaacgccgaaggtggacggagttttgtccgctgctcatcgtaggaaagctag 380
Query: 181 cagagatgtgcggataaatgggacagcagtcggctgaggggcgcaataggaagggaagag 240
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cagagatgtgcggatgaatgggacagcagtcgactgaggggcgcaataggaagggaagag 440
Query: 241 aaagaagtgtatgaggtcttgtcaggttctgcgatttcaaatggagctaagagcagttct 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaagtggatgaggtcttgtcaggttctgcgatttcaaatggagctaagagcagttct 500
Query: 301 cggagggggacccatgcaggagtaagacaggcatgtcctcaaaacaccacaatgagcaat 360
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 501 cgaagggggacccatgcaggagtaagacaggcatgtcctcaaagcaccacaacgagcaat 560
Query: 361 gggggaatgtgttcaaattctaacctactctcgggcctggttagtcttcctttctgcctg 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggaaatgtgttcaaattctaacctactctcgggcctggttagtcttcctttctgcctg 620
Query: 421 tacagtaagaaaacttttcctttgacaccaacccccaaactgtttacatattaatcagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacagtaagaaaacttttcctttgacaccaacccccaaactgtttacatattaatcagta 680
Query: 481 tgaaaacaagcacattgctccagccaagctcaatttcctttgtgggaacagtttcccatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaaacaagcacattgctccagccaagctcaatttcctttgtgggaacagtttcccatg 740
Query: 541 tcccatgctt 550
||||||||||
Sbjct: 741 tcccatgctt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
