BAC Information

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BAC

Clone NameMSMg01-052E08
Chromosome17 (Build37)
Map Location 82,641,250 - 82,711,446
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707, LOC625467
Downstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124, EG545226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052E08.T7 (MSMg01no052_e08.b1)MSMg01-052E08.TJ (MSMg01no052_e08.g1)
ACCAG280804AG280805
length711707
length of high quality
(start - end)		670 (42 - 711)638 (70 - 707)
definitionCHROMAT_FILE: MSMg01no052_e08.b1 PHD_FILE: MSMg01no052_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:50 2005CHROMAT_FILE: MSMg01no052_e08.g1 PHD_FILE: MSMg01no052_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,710,781 - 82,711,446)(82,641,250 - 82,641,887)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTACTGAATTCCAAGCTCGAAGGCTTCAAGGATTTTCTAGGACATTGGA
ACACTGGCGAAGGCTTAGCTTGTCAAGAAATCAAGCCTTAAAGGCACTTA
TAATAAAACAATACTGAAAGAGAGCACGTGGATCCATACACCAGACTAAC
ACGGGGATAGAGTTTGAGTATACGGGCTATGGGAATTCCAAGGTTTCAGG
GGGCATAGTTTCCTTGAAACTCTGCCTCGTGAGTGCTTCTAAGCCTCTCG
GCCTGTCAAGCAGACTTCACTGGAGTGGGCATAGCATCTTGTCACTAATG
TCACACCAATAATTAAAATATTTATATGTAAAGATTCTGTCTTGTCATTT
ATATCACATAGATACTTGACATTGTTCATTAGAAATGCTTTCTTGTTTGG
AAGAATATTTACAAATGTAGGAAGTGATTAAAGTCTCCACTTCAAGTGTC
TATGGGACACATAGTAGTTCTGTTATACCACAGTATCTTCTGATATTGTT
AACATTGCATCCCACAGAGAACTTCCTTAAGCAGGAAGGTAAATGACTCA
AAATAACTTCAGCAAGCCCCAGAGACTGATCAGAATCCCAGATTCACTAG
CCCCTTCCTCTGGCAACATAAGCAATTAAAGTTTAGAATCTCTCTCAGAC
CAGCCAAGCTG

TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAATG
GAGTTATTTGATTTTCTGGAGTCCACCTTCGTGAGTTCTTTATATATATT
GGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTTGCCTTGCAGAA
GCTTTGCGATTTCATGAGGCAGGGAAGCAGTTTTAACCTGACACTGGGAT
CAAAGTTGTCTTTTACCAAGACATCAATTATTAACTCCTTAGAGGCAGCG
ATGTTGTTGAGTTAACAATACTAGAGAACAGTTTATACTAATCAAGCTTA
TCATTCAGGGGTAGAAGAGAGCATTGATCTGCAGACAATTTTTAAAGGCA
CTATGGGTACAGGATGTTCTTTGATGACACCAGCTCTACTTGTTAAGCGT
TATGGCTGATTACAGTGAAGTAAAAAGTTTATCTAAGCAGAGTTTAAGTG
ACAGCACTAAATAGTAGCATTTCCCCATCTTTTAAATAAGAGCAAGTATT
GACAGCATGACTTGTTGAAAATTAGTACCCAGCAGTTTTGGGAAGTAATG
GTCCCTTCCCCAGTGCATTGCGAATTGTGTTCATAAAGCCTGTTTCCCTG
CATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_e08.b1 MSMg01no052_e08.b1 CHROMAT_FILE:
MSMg01no052_e08.b1 PHD_FILE: MSMg01no052_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:50 2005
         (670 letters)



>mm_chr17_82710477_82711546
          Length = 1070

 Score = 1241 bits (642), Expect = 0.0
 Identities = 660/666 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctactgaattccaagctcgaaggcttcaaggattttctaggacattggaacact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gaattcctactgaattccaagctcgaaggcttcaaggattttctaggacattggaacact 911

                                                                       
Query: 65  ggcgaaggcttagcttgtcaagaaatcaagccttaaaggcacttataataaaacaatact 124
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 910 ggcgaaggcttagtttgtcaagaaatcaatccttaaaggcacttataataaaacaatact 851

                                                                       
Query: 125 gaaagagagcacgtggatccatacaccagactaacacggggatagagtttgagtatacgg 184
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 850 gaaagagagcacgtggatccatacaccagactaacatgggaatagagtttgagtatacgg 791

                                                                       
Query: 185 gctatgggaattccaaggtttcagggggcatagtttccttgaaactctgcctcgtgagtg 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gctatgggaatgccaaggtttcagggggcatagtttccttgaaactctgcctcgtgagtg 731

                                                                       
Query: 245 cttctaagcctctcggcctgtcaagcagacttcactggagtgggcatagcatcttgtcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cttctaagcctctcggcctgtcaagcagacttcactggagtgggcatagcatcttgtcac 671

                                                                       
Query: 305 taatgtcacaccaataattaaaatatttatatgtaaagattctgtcttgtcatttatatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 taatgtcacaccaataattaaaatatttatatgtaaagattctgtcttgtcatttatatc 611

                                                                       
Query: 365 acatagatacttgacattgttcattagaaatgctttcttgtttggaagaatatttacaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 acatagatacttgacattgttcattagaaatgctttcttgtttggaagaatatttacaaa 551

                                                                       
Query: 425 tgtaggaagtgattaaagtctccacttcaagtgtctatgggacacatagtagttctgtta 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tataggaagtgattaaagtctccacttcaagtgtctatgggacacatagtagttctgtta 491

                                                                       
Query: 485 taccacagtatcttctgatattgttaacattgcatcccacagagaacttccttaagcagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taccacagtatcttctgatattgttaacattgcatcccacagagaacttccttaagcagg 431

                                                                       
Query: 545 aaggtaaatgactcaaaataacttcagcaagccccagagactgatcagaatcccagattc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaggtaaatgactcaaaataacttcagcaagccccagagactgatcagaatcccagattc 371

                                                                       
Query: 605 actagccccttcctctggcaacataagcaattaaagtttagaatctctctcagaccagcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 actagccccttcctctggcaacataagcaattaaagtttagaatctctctcagaccagcc 311

                 
Query: 665 aagctg 670
           ||||||
Sbjct: 310 aagctg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no052_e08.g1 MSMg01no052_e08.g1 CHROMAT_FILE:
MSMg01no052_e08.g1 PHD_FILE: MSMg01no052_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:50 2005
         (638 letters)



>mm_chr17_82641050_82642087
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccattttttaatggagttatttgattttctggagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatggagttatttgattttctggagtccacctt 260

                                                                       
Query: 61  cgtgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgagttctttatatatattggatattagtcccctatctgatttaggataggtaaagat 320

                                                                       
Query: 121 cctttcccaatctgttggtggcctttttgtcttattgaaggtgtctttttgccttgcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 cctttcccaatctgttggtggcctttttgtcttattgaaggtgtctttttgtcttgcaga 380

                                                                       
Query: 181 agctttgcgatttcatgaggcagggaagcagttttaacctgacactgggatcaaagttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctttgcgatttcatgaggcagggaagcagttttaacctgacactgggatcaaagttgt 440

                                                                       
Query: 241 cttttaccaagacatcaattattaactccttagaggcagcgatgttgttgagttaacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttttaccaagacatcaattattaactccttagaggcagcgatgttgttgagttaacaat 500

                                                                       
Query: 301 actagagaacagtttatactaatcaagcttatcattcaggggtagaagagagcattgatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actagagaacagtttatactaatcaagcttatcattcaggggtagaagagagcattgatc 560

                                                                       
Query: 361 tgcagacaatttttaaaggcactatgggtacaggatgttctttgatgacaccagctctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagacaatttttaaaggcactatgggtacaggatgttctttgatgacaccagctctac 620

                                                                       
Query: 421 ttgttaagcgttatggctgattacagtgaagtaaaaagtttatctaagcagagtttaagt 480
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ttgttaagcgttatggctgattacagtgaagtaaaaaggttatctaagcagagtttaagt 680

                                                                       
Query: 481 gacagcactaaatagtagcatttccccatcttttaaataagagcaagtattgacagcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacagcactaaatagtagcatttccccatcttttaaataagagcaagtattgacagcatg 740

                                                                       
Query: 541 acttgttgaaaattagtacccagcagttttgggaagtaatggtcccttccccagtgcatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acttgttgaaaattagtacccagcagttttgggaagtaatggtcccttccccagtgcatt 800

                                                 
Query: 601 gcgaattgtgttcataaagcctgtttccctgcatgctt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcgaattgtgttcataaagcctgtttccctgcatgctt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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