BAC Information

Click to search

BAC

Clone NameMSMg01-052H20
Chromosome17 (Build37)
Map Location 44,711,370 - 44,711,669
singlet/doubletsinglet
Overlap genenone
Upstream genePla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052H20.T7 (MSMg01no052_h20.b1)MSMg01-052H20.TJ (MSMg01no052_h20.g1)
ACCAG280963AG280964
length712703
length of high quality
(start - end)
299 (72 - 370)297 (67 - 363)
definitionCHROMAT_FILE: MSMg01no052_h20.b1 PHD_FILE: MSMg01no052_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:07 2005CHROMAT_FILE: MSMg01no052_h20.g1 PHD_FILE: MSMg01no052_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCCT
ACATATTATCGCTNGAAAGAAAATGAGTTCAATTGGGGGGGTGGGAATCG
CTAAACACACAAGTGAATAACCCACCCTGAGAGAGACAGCAGACGCAAAC
ACTAAAGCCAGACCTTCAGAAGTCACGGTACTTCAGCCAATCAAATGTGC
TTCATATGCTCTGAAGATATGAAGAAAGGTCAAATGGCCAACAAAGAAAG
GAGAGAACGTTCACAACTGGCCATGTTTGAAAAGGGAGCAAACAGAATTT
GAAATTTATAAAAATAAAAAGTTGGTAAGAAATTAAACTTTCAATTATCA
GACTAAAGATAGATGAACTGCCATACTGAAGAAATTATACAGATCTGACA
GTGGGGAATGCAGGCAACGAGGGCCATGAATGTGGTTAGGGAGCCTCAAA
AACGGTGGTGATTCTCTATAGGAAGCAGTCGGGGAAATGAAGAGAAACGG
TATTTATTTAAATAGATAATGACAGAGAAATCTCCAGAGTTTATTCAAGA
CACCAGCACACAGAATGAGAAAGCTTGGGAAATACCAAGTTTAAAAAAAA
AAAAACCAAAAACAAAAAACATAAAAAAAACCTATGAAAGAAATTTCACC
TTAAATAAATCCTATGTAACGTTACCGAGCCACAGAGCCGGTGTGCATAG
TGGGCCGTGCGA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTGGGGCTGTGCATGTGTAACACACGAAGATC
CTGGGCTTTTCTGGACGATGAGAAATAATTCCAAAGGTGAGCTGGGTTTC
AGAACACATGAGCGACGTGGAATACTTGAGAATGTTGAGCAGAGAGCATT
GTGATGATTAAAGGATTGTAAAATTGAACCTATAAGGATAAGTTGAAAGA
CTTGGGATTATTTAGCTTCATGAAGAGGAGGCTGAAAAAAATGACTTAAT
AACAGACTTGGAAATTATGAGACTTATTAAGCTCTGTATGGTGGCCAGCT
GTTTTGTTTCGGGCGAAGCCAGACGAAGAAGAGCAGGTCATTTAACTGGA
GCATGAGGGATGTGGGTGAGACTTAAGGAAGAGCAGGTTGGCTGAGGGAG
AATTGCTGGGCAGAATGGGTTCCTGGAGATTGACGGTTGGAGTTGGGGGG
CTCTTCAGATCCCGTTCTAAGCAATCCTTTGTGTGCTTGGGACAGGCAGC
AATAATGCCACCTTTCTGCTTCTAAAAAAATCAAAGGCCTGATTTCTGTT
TCCCATTACGGTTCTGAGGCTCATAATCCCAGGTGTTTGTGGACCTAATT
GATGAGGGTAATTTGACTTGCTCCACTGGCCATTAAAATCTTTCATTGAA
AAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_h20.b1 MSMg01no052_h20.b1 CHROMAT_FILE:
MSMg01no052_h20.b1 PHD_FILE: MSMg01no052_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:07 2005
         (299 letters)



>mm_chr17_44711170_44711869
          Length = 700

 Score =  534 bits (276), Expect = e-156
 Identities = 294/300 (98%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgagttcaattgggggggtgggaatcgctaaacacacaagtgaataacccaccctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatgagttcaattgggggggtgggaatcgctaaacacacaagtgaataagccaccctgag 260

                                                                       
Query: 61  agagacagcagacgcaaacactaaagccagaccttcagaagtcacggtacttcagccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agagacagcagacgcaaacactaaagccagaccttcagaagtcacagtacttcagccaat 320

                                                                       
Query: 121 caaatgtgcttcatatgctctgaagatatgaagaaaggtcaaatggccaacaaagaaagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caaatgtgcttcatatgctctgaagatatgaagaaaggtcaaatggccaacaaagaaaag 380

                                                                       
Query: 181 agagaacgttcacaactggccatgtttgaaaagggagcaaacagaa-tttgaaatttata 239
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 agagaatgttcacaactggccatgtttgaaaagggagcaaacagaaatttgaaatttata 440

                                                                       
Query: 240 aaaataaaaagttggtaagaaattaaactttcaattatcagactaaagatagatgaactg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aaaataaaaagttggtaagaaattaaactttcaattatcagactaaagacagatgaactg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)