Query= MSMg01no052_k11.b1 MSMg01no052_k11.b1 CHROMAT_FILE:
MSMg01no052_k11.b1 PHD_FILE: MSMg01no052_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:20 2005
(622 letters)
>mm_chr17_77546393_77547416
Length = 1024
Score = 1079 bits (558), Expect = 0.0
Identities = 605/621 (97%), Gaps = 2/621 (0%)
Strand = Plus / Plus
Query: 4 ggaa-tcactattgtcca-atatacttatatttttttttcgttctgagtatcaacacctc 61
|||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactattgtttatatatacttatatatttttttcgttctgagtatcaacacctc 263
Query: 62 acagctttcaattctcattttcagaatatagttccctctacaaaatcctaaagtcaagta 121
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 264 acagctttcaactctcattttcagaatatagttccctctacaaaagcctaaagtcaagta 323
Query: 122 ttcagaagttccaatttttctcaattaggctaaacacaactcagctgaaagcttaccagt 181
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcagaagttccaattattctcgattaggctaaacacaactcagctgaaagcttaccagt 383
Query: 182 aagattgaaaatcacaaaaatgctagataagataaagtgctaatatatggcatgtagcga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagattgaaaatcacaaaaatgctagataagataaagtgctaatatatggcatgtagcga 443
Query: 242 aaatataacacattaaatgaaaacagaaagcagtgccaatactgaaagaaaggtaaaaaa 301
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 aaatataacacattaaatgaaaacagaaagcagtgccaatacttaaagaaaggtaaaaaa 503
Query: 302 caccaaatcaaggaattaaacaaatgataagtttttattgagatataaaatatttcttaa 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caccaaatcaaggaattaaacaaatgataagtttttattgagatataaaatatttcttag 563
Query: 362 actgatatgccaattattcataatttggtttggttaagtataaatatattagacactgat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actgatatgccaattattcataatttggtttggttaagtataaatatattagacactgat 623
Query: 422 atgtaagacctgtatcaaactgaaaccttaatgatggaatagaatggactaagtaatcta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgtaagacctgtatcaaactgaaaccttaatgatggaatagaatggactaagtaatcta 683
Query: 482 gattaaatataaatatttcttattcattttaggtactctggatgaataattaaacaccaa 541
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 684 gattaaatataaatatttcttattcattttaggtactctggatgaacaattaaacaccga 743
Query: 542 gagctaactgccatttcttanaatgtgttttcctttcaacatcactctgactattggaaa 601
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 gagctaactgccatttcttaaaatgtgtttttctttcaacatcactctgactattggaaa 803
Query: 602 ttatgagttacattggtcaac 622
| |||||||||||||||||||
Sbjct: 804 tcatgagttacattggtcaac 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1024
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1014
Effective search space: 620568
Effective search space used: 620568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_k11.g1 MSMg01no052_k11.g1 CHROMAT_FILE:
MSMg01no052_k11.g1 PHD_FILE: MSMg01no052_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:20 2005
(633 letters)
>mm_chr17_77695969_77697001
Length = 1033
Score = 1174 bits (607), Expect = 0.0
Identities = 625/631 (99%)
Strand = Plus / Minus
Query: 1 caggtaagaaggacaggcatgtatcaagtacagagtgtccatagtgacattgtagaggtc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 631 caggtaagaaggacaggcatgtatcgagtacagagtgtccatagtgacattgtagaggtc 572
Query: 61 agttttagagcttaggtatgtgagtaagcacataagaggaaacatgagcttggggccttc 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 agttttagagtttaggtatgtgagtaagcacataagaggaaacatgagcttggggccttc 512
Query: 121 agggcagtctaagaggcaataagtgagttacccaaggatctagtaaaagacaactgctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agggcagtctaagaggcaataagtgagttacccaaggatctagtaaaagacaactgctat 452
Query: 181 acctgtggagaaggtcagaagacatctagccaaaagaaaaatgagaggaaatacatacaa 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 acctgcggagaaggtcagaagacatctagccaaaagaaaaatgagaggaaatacatacaa 392
Query: 241 tgaaacatgtaaaggtgtccattgtccaagtgcttaccatatggaagagagaactagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgaaacatgtaaaggtgtccattgtccaagtgcttaccatatggaagagagaactagatt 332
Query: 301 ctttctggtctcaaacataaatgactacttaaacagggaataatttgaagaagaaagaca 360
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 331 ctttctggtctcaaacataaatgactactcaaacagggaataagttgaagaagaaagaca 272
Query: 361 gcgttacacaaaacagtgttataaattatcactgaaggaagattgatgacttaataggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gcgttacacaaaacagtgttataaattatcactgaaggaagattgatgacttaataggaa 212
Query: 421 tatgcataaggaaaattatagattttttaataatataataaataataataaagtaaaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 211 tatgcataaggaaaattatagattttttaataatataataaataataatgaagtaaaaat 152
Query: 481 aattgtatcaactgttagtagcactttagtataatttaaatggatttcattatgaggaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 aattgtatcaactgttagtagcactttagtataatttaaatggatttcattatgaggaat 92
Query: 541 caacatgtagaaaatcaacaatatcaggtagtctttcatcttctacttgtgtctatgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 caacatgtagaaaatcaacaatatcaggtagtctttcatcttctacttgtgtctatgaaa 32
Query: 601 cccaaattgtgttgaaaattataaattctgt 631
|||||||||||||||||||||||||||||||
Sbjct: 31 cccaaattgtgttgaaaattataaattctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
