Query= MSMg01no052_n18.b1 MSMg01no052_n18.b1 CHROMAT_FILE:
MSMg01no052_n18.b1 PHD_FILE: MSMg01no052_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
(614 letters)
>mm_chr17_39144898_39145911
Length = 1014
Score = 1096 bits (567), Expect = 0.0
Identities = 603/615 (98%), Gaps = 2/615 (0%)
Strand = Plus / Plus
Query: 1 ggcagggaccaggagctgatgcagaagccaaggatagtttgtttcacctgatttactaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcagggaccaggagctgatgcagaagccaaggatagtttgtttcacctgatttactaaa 260
Query: 61 tcagaatccaagaacaccagcctagggag-tgaactactaacaatgggcttggtcatttt 119
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 261 tcagaatccaagaataccagcctagg-aggtgaactactaacaatgggcttggtcatttt 319
Query: 120 ccattacttactaattaagaaaattagttatagataggtcattggagatcattttctcaa 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 ccattacttactaattaagaaaattagttatagacaggtcattggagatcattttctcaa 379
Query: 180 attaggtgttctattttcatataaccctggtttttatgaagtagcattggttaccactgg 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 attaggtgttctattttcatataaccctggtttttatgaagtagcattggtgaccactgg 439
Query: 240 taaacacatgtattttacttgaagtttagttactaacctagcttccagataagacattac 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taaacacgtgtattttacttgaagtttagttactaacctagcttccagataagacattac 499
Query: 300 caatcacacatcaatttttgtctttcctaaataaatggatgttgtttccgtagtttatac 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 caatcacacatcaatttttgtctttcctaaataaatggatgttgtttctgtagtttatac 559
Query: 360 aatggtgacaaaagtgttaaagtggataagaatctcaaagaaggttatgtccttgattct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatggtgacaaaagtgttaaagtggataagaatctcaaagaaggttatgtccttgattct 619
Query: 420 gatatttgacttcacgattaaaatgtgtcactgtaaatatttagattggttatttgattc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatatttgacttcacgattaaaatgtgtcactgtaaatatttagattggttatttgattc 679
Query: 480 agcttttcattgaagagccaagtcacaaggacactgtctgtacctgtcctaaggactgca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 680 agcttttcattgaagagccaagtcacaaggacactgtctgtacctgtcctaaggatttca 739
Query: 540 acagctacagtggaaggcatagaacctggcaaacacagtaatgacgtgttataagcatga 599
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 740 acagctacagtggaaggcatagaacctggcaaccacagtaatgacgtgttaaaagcatga 799
Query: 600 acttagacaagtgcc 614
|||||||| ||||||
Sbjct: 800 acttagactagtgcc 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_n18.g1 MSMg01no052_n18.g1 CHROMAT_FILE:
MSMg01no052_n18.g1 PHD_FILE: MSMg01no052_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:36 2005
(567 letters)
>mm_chr17_39270575_39271541
Length = 967
Score = 656 bits (339), Expect = 0.0
Identities = 357/363 (98%)
Strand = Plus / Minus
Query: 205 tccactgatgctgaggcaaaaccctcctgggccgggcggaccactgtcctctgaccggga 264
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 967 tccactgatgctgaggcaaagccctcctgggccgggcggaccactgtcctctgaccagga 908
Query: 265 aggtggctggatgtctgaagcccgaaaagtgcgctgcctcagaagctctgtggctcctgc 324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 907 aggtggctggatgtctgaagcccgaaaagggcgctgcctcagaagctctgtggctcctgc 848
Query: 325 ctgtcccagatgctgttagcttctgtagtgcacactctcaactgtgtagactaattttgg 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 847 ctgtcccagatgctgttagcttctgtagtgcacactctcaactgtgtagactaattttag 788
Query: 385 tgaagtcctgaaaccaaggttaagattaccaaagtcttgataaggggtggcattcatttg 444
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 787 tgaagtcctgaaaccaaggttaagactaccaaagtcttgataaggggtggcattcatttg 728
Query: 445 atatttgcattgcagagtagaccactagggttaattcctgatcttccaaggagtcccaac 504
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 727 atatttgcattgcagagtagaccgctagggttaattcctgatcttccaaggagtcccaac 668
Query: 505 attgtgacataagcagtttaggcaagagaatacataaattgtgaggaaataaatgaaatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 attgtgacataagcagtttaggcaagagaatacataaattgtgaggaaataaatgaaatg 608
Query: 565 gct 567
|||
Sbjct: 607 gct 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
