BAC Information

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BAC

Clone NameMSMg01-053O11
Chromosome17 (Build37)
Map Location 40,446,658 - 40,446,891
singlet/doubletsinglet
Overlap geneCrisp1
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
Downstream geneLOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O11.T7 (MSMg01no053_o11.b1)MSMg01-053O11.TJ (MSMg01no053_o11.g1)
ACCAG281988AG281989
length950695
length of high quality
(start - end)
---234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no053_o11.b1 PHD_FILE: MSMg01no053_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:57 2005CHROMAT_FILE: MSMg01no053_o11.g1 PHD_FILE: MSMg01no053_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAACTAATTTTGTGTGGTGGNAAGANAAAANNCCCCTTCGGGAGGGGGGG
GGGNGANNGGGGTGGTTTTACAATAAAAAGGGGGAGGGGGTAAGATAANT
TTTCTGTTTTTTTACTTATTGTTTCTTTTTCCCCAGTGAAATTAGAGATA
AATAAACGAGAACGAATGACCATCGGCAATAATATTTGTGTGTATAAAAT
GTTTATAGTGAGGCCTTATATGTTCGGGGGCTGTGACCGTAATTTAGTAG
TCTTGTTAAAACGGTTCCTATGTAAACCTATTGTATTTTCTATGTTACGA
TGTGTGAAAGGCGGTCTGACGCACATGGGCACTGCGACGTTATTGGAAGA
CTGGCCAGCGGCAGAGGTTTTTTTTTGACCACCGGGTAAAGGGCAAAAGA
GAGCATCGAGGATAAAATAATAATCCACATAGCGCACCAGCCTCAACAGA
GCATCATAGTAATACTCTACATTACACCAATACTAACTCCCACTAAATCT
CTAACTATACACTTAAACATATATATAACAACACCAGTTATCTTCGTGAT
CACAACAACCCCTATTACAATTTTACAACCCGCTTACTCTATCCTACATA
CCATCTATACGTCGGCAAAGGGCACAAACAACGGGTGATAAGAGAGCATC
AACGGGAGCGAGGTAGGATATGATTAATCGGCGCGGAGATATGTCAGCGG
GGCGCCTTGAGATCAGTGCAGGACACCGATAGTGAATGGGATGGCGAGAC
GAATACACCCAGACGAGAACCGACGCAGATGGGTCCCGTCAATGATGTAT
TTTCACCGTAGTACAGAACAGGGCGCCGCGTGGATATGGTAGACGTGAGA
TCGCCAGCGACTATCTGATATGGCTCATACCTCTGCTACGACACTGCACA
TGATATAATCGATCTATACGCACCCGTNCGCGTGGATAGAGTGGTGTCCG

CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTAGCTGTGAGATAGTCCTTGGCT
CAAGGCATTCATTGGTGCTTTCACAACATAAAACAACAGCTAGATGTGGA
CATTTTGCAAATACTGGCAATACCTTGTGATTAGATCTATGTGGCAAATG
TCTGCAGAAATTTGAGAGGACTAAGGACTACACGAAAGAGAACCAACTTA
TCCAAGAAGTAAGATAAAATGTATGTGCAGGTCTGTCCACTGATAATTAA
GCACTAACATCTTGCTCTACACTGTATAAGAAGAGAGGATTTGAAGTATA
CTTCCATCAGCAAGGGGTATTTATATTTCTGCCAATTCTTATATCACTTT
ACCTACCTGTCCCACACGAACCCAAACATGTGTAACTAATTATCAACTTC
TGAGTTAACAACAGGTTTATTTGTGTTCATTAAATTGTAAAGCCAGTAAT
ACTCAAGAATTTCAAGAATCCATTGCCTACTATTTGACATGTATATTATA
TTACACAATACCCTTTGGAGCGATCACAAAATCATACCTATCTATCACAA
ATTCTCTTTACGAATTAGATAATTGAACGCACATATGTAGTGTGTCTAGA
CCTCCATAGTCTCACAGCTTCAAACTGTGTCAAAGTCTGAATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o11.g1 MSMg01no053_o11.g1 CHROMAT_FILE:
MSMg01no053_o11.g1 PHD_FILE: MSMg01no053_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:57 2005
         (234 letters)



>mm_chr17_40446458_40447091
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaaacaacagctagatgtggacattttgcaaatactggcaataccttgtgattagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cataaaacaacagctagatgtggacattttgcaaatactggcaataccttgtgattagat 375

                                                                       
Query: 61  ctatgtggcaaatgtctgcagaaatttgagaggactaaggactacacgaaagagaaccaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 374 ctatgtggcaaatgtctgcagaaatttgaggggactaaggactacacgaaagagaaccaa 315

                                                                       
Query: 121 cttatccaagaagtaagataaaatgtatgtgcaggtctgtccactgataattaagcacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttatccaagaagtaagataaaatgtatgtgcaggtctgtccactgataattaagcacta 255

                                                                 
Query: 181 acatcttgctctacactgtataagaagagaggatttgaagtatacttccatcag 234
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 254 acatcttgctctacactgtagaagaagagaggatttgaagtatacttccatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)