Query= MSMg01no057_f13.b1 MSMg01no057_f13.b1 CHROMAT_FILE:
MSMg01no057_f13.b1 PHD_FILE: MSMg01no057_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:15 2005
(657 letters)
>mm_chr17_55202515_55203573
Length = 1059
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%), Gaps = 2/584 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatctggaacgggcaagtttaatttatgtccttttgtgg-atcacacgatttt 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 584 ggaattctatctggaacgggcaagtttaatttatgtccttttgtggcatcacacgatttt 525
Query: 63 tttgatcgtgaagaagtcaacactgaggaacttcgtgcttgtgtaggatcattttctata 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttgatcgtgaagaagtcaacactgaggaacttcgtgcttgtgtaggatcattttctata 465
Query: 123 tgttgttcctttgaagaaaag-ttgctttcctttcatttcctttctgagtaaggtaattt 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgttgttcctttgaagaaaagtttgctttcctttcatttcctttctgagtaaggtaattt 405
Query: 182 tctgttgtttgtagcccaagtttcaagttcacattttctgtgttattatctattttctcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tctgttgtttgtagcccaagtttcaagttcacattttctgtgttattatctattttctcc 345
Query: 242 ttaagatgatcattttgtactccaaatttcaagtttacatttttggtgtccttatttatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttaagatgatcattttgtactccaaatttcaagtttacatttttggtgtccttatttatt 285
Query: 302 ccttccttaaggtcatcatcattttgcttgtcaaaaatggaattactttcacatttcttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccttccttaaggtcatcatcattttgcttgtcaaaaatggaattactttcacatttcttt 225
Query: 362 gcatcctcaaaatcactgtcaaagaaagaacaactcagggttgttttgatttgtatttcc 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gcatcttcaaaatcactgtcaaagaaagaacaactcagggttgttttgatttgtatttcc 165
Query: 422 atgatgattaaggatgttgaacattttttaatagggttatttgtttttctggagtctgac 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 164 atgatgattaaggatgttgaacattttttaatagggttatttgtttttctggagtccgac 105
Query: 482 ttcttgatttctttgtatatattggatattaaccctctatcggatttaggtttgataaag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ttcttgatttctttgtatatattggatattaaccctctatcggatttaggtttgataaag 45
Query: 542 atcttttcccaatctgttggttgcctttttgtcttattgacagt 585
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atcttttcccaatctgttggttgcctttttgtcttattgacagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1059
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1049
Effective search space: 678703
Effective search space used: 678703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f13.g1 MSMg01no057_f13.g1 CHROMAT_FILE:
MSMg01no057_f13.g1 PHD_FILE: MSMg01no057_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:16 2005
(628 letters)
>mm_chr17_55114543_55115570
Length = 1028
Score = 1176 bits (608), Expect = 0.0
Identities = 623/628 (99%)
Strand = Plus / Plus
Query: 1 cctaaaataaataaattgaaagtaggctcatgtttaattgattttaactatttacaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaaaataaataaattgaaagtaggctcatgtttaattgattttaactatttacaggga 260
Query: 61 agaatttctattttaggaatgcttgcttatgtggaactgcaaccttctctgaaaggcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatttctattttaggaatgcttgcttatgtggaactgcaaccttctctgaaaggcgag 320
Query: 121 gggaaaattgtttgacaattaaccagctttattattgtcatatctgttaaggcttcaaat 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gggaaaattgtttgacaattaaccagctttattactgtcatatctgttaaggcttcaaat 380
Query: 181 atttgtaaatggatatcgttgtctttgtggcaagaaacagatgagcaggtatctagggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgtaaatggatatcgttgtctttgtggcaagaaacagatgagcaggtatctagggag 440
Query: 241 ccctatgtggaaaataaaataaaactagcactttatgaggcatgatttagttcaataaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctatgtggaaaataaaataaaactagcactttatgaggcatgatttagttcaataaca 500
Query: 301 acaactgccattagcatttagcataaataacaggctgaaagggcttagtagccatggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaactgccattagcatttagcataaataacaggctgaaagggcttagtagccatggaca 560
Query: 361 gcacactttctctcttatgtgactaaccactcccatttttccatgacgtatgcatggaaa 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gcacactttctctcttatgtgactaaccactcccatttttccatgatgtatgcatggaaa 620
Query: 421 caaatccaataggcagatctataaggagctagaactcccacacagcagaactggagactc 480
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 621 caaatccaataggcagatctataaggagctagaactcccaaacagcagaactagagactc 680
Query: 481 tgaatgaaaattgagaaatgtttctcgaaccacagggtgtaacatgaaaacaagcaagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaatgaaaattgagaaatgtttctcgaaccacagggtgtaacatgaaaacaagcaagct 740
Query: 541 catagctttacagaaagataccagacaacatagcaagcaccaagatatagcttgaaaatt 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 catagctttacagaaagataccagacaacacagcaagcaccaagatatagcttgaaaatt 800
Query: 601 gcataatgtcatggatgaagagaagttt 628
||||||||||||||||||||||||||||
Sbjct: 801 gcataatgtcatggatgaagagaagttt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
