BAC Information

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BAC

Clone NameMSMg01-057I16
Chromosome17 (Build37)
Map Location 22,143,974 - 22,256,304
singlet/doubletdoublet
Overlap geneLOC674332, LOC631010, EG665844
Upstream geneZfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825
Downstream geneEG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057I16.T7 (MSMg01no057_i16.b1)MSMg01-057I16.TJ (MSMg01no057_i16.g1)
ACCAG284672AG284673
length663672
length of high quality
(start - end)
464 (48 - 511)405 (54 - 458)
definitionCHROMAT_FILE: MSMg01no057_i16.b1 PHD_FILE: MSMg01no057_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:31 2005CHROMAT_FILE: MSMg01no057_i16.g1 PHD_FILE: MSMg01no057_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,255,853 - 22,256,304)(22,143,974 - 22,144,378)
sequence
CTCCTGTTCCAAGAGGAGCGCGGATTCACTGATTCCCCTTAAAGCCAACA
GAGGAACATTAGCGAGGGGTAGGTGAGCTATATCCTCATTGATGGATTTT
ACCTCTGGGAGTGTTGGTGATAATATGATTCAGACTAACTATCCTTGCTT
CATGCCAAGGAGAACTCTTGACCTTTCGGTGGCAAGCTTGGCTATTGGTT
TTTTAGAGCTGGTGAGGGGGCATCTCTTGACCTCTTGGTCAGAAGTTTGC
CTAACAAGCTGAGAGGGGTCTCTTTTACATAATCCTGTGGTTTCAACTAA
TTTGCCCAGTTCTGGAAAGTAGAAACTCAGGCCTGTTTTCCTGAACTGCT
AATTTGCACCCACTCATGGAGTTAGCCTTTCTCAGGCCAATTCACTCCTT
TAAAAGCCCTGGATGGTGAAGAAAGGAGACTGTTACAAAGGGTTTAGATA
TGTTAATAGAGGGATTAAGCAAGGGATGGGGAGGTGCTCATGTGACAGTA
GAAAGAGGACAAGGAATTGGTTTTGCCAGAGTCTGTTTCAATGTTGATTC
TGGAAAGTGTCTCTGAGAATAAGAGCAGATGTGGTGATATTGCTTTTCCA
CTTAAGGCCCTGCCGTAAGCAGTCAGTTGTTCTCCGAATTTGACTAATTT
TGACTCTCTGAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTAAGACCTGAGCAGCACAAAAAATATTTTTTTCATAGTCACTACATT
TGTAAATCTTCTTTCTGGTGTTCATCTTGTAATGGCTTTCAAAGTCTGGT
AAAACACTTACCACATTCTGTACATTTGTATGCATATTCCCCATAATGGA
TTTTGTCATGTACTTTGAGAAATGATTTACTATAGTTTGAACAGTTATGA
GGTTTCTCTCTAATATGAACTCTTTCATGCATATTGAGGCTTGAGTACAT
CTGTAAGCATTTTCCACATTTCCTGCACTTGTGTAGTTTCTTTCCACTAT
TTGTTCATTTCAACTTGAGTTTGTTTAGAGTCAAAACCCTTTTCACGCTC
TGCCTTGTTGTGTTCGTTTTTCCTATGTGGATTCTTTGATTTAGACTACT
GATGGAAGGGAAAGTTAAGCAAGCTATGCAATGTTTATATTTCCAAAGTT
CTTGGTCGTTCCCAGTTTTTGTGTCTTTAGATTTGGTAATTGAACACAAA
GGCATCCCCATTATTCGTTTTACAAGGCGTACTTTGGCAGGATTCATGAA
TCCTTTTTGCCAATTTGTTACCTTTCATAAGGTTTCTCTTGTACATTCCT
ATAATCTTGTACAATTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_i16.b1 MSMg01no057_i16.b1 CHROMAT_FILE:
MSMg01no057_i16.b1 PHD_FILE: MSMg01no057_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
         (464 letters)



>mm_chr17_22255853_22256716
          Length = 864

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaggaacattagcgaggggtaggtgagctatatcctcattgatggattttacctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acagaggaacattagcgaggggtaggtgagctatatcctcattgatggattttacctctg 393

                                                                       
Query: 61  ggagtgttggtgataatatgattcagactaactatccttgcttcatgccaaggagaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggagtgttggtgataatatgattcagactaactatccttgcttcatgccaaggagaactc 333

                                                                       
Query: 121 ttgacctttcggtggcaagcttggctattggttttttagagctggtgagggggcatctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttgacctttcggtggcaagcttggctattggttttttagagctggtgagggggcatctct 273

                                                                       
Query: 181 tgacctcttggtcagaagtttgcctaacaagctgagaggggtctcttttacataatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgacctcttggtcagaagtttgcctaacaagctgagaggggtctcttttacataatcctg 213

                                                                       
Query: 241 tggtttcaactaatttgcccagttctggaaagtagaaactcaggcctgttttcctgaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tggtttcaactaatttgcccagttctggaaagtagaaactcaggcctgttttcctgaact 153

                                                                       
Query: 301 gctaatttgcacccactcatggagttagcctttctcaggccaattcactcctttaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gctaatttgcacccactcatggagttagcctttctcaggccaattcactcctttaaaagc 93

                                                                       
Query: 361 cctggatggtgaagaaaggagactgttacaaagggtttagatatgttaatagagggatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  cctggatggtgaagaaaggagactgttacaaagggtttagatatgttaatagagggatta 33

                                           
Query: 421 agcaagggatggggaggtgctcatgtgacagt 452
           ||||||||||||||||||||||||||||||||
Sbjct: 32  agcaagggatggggaggtgctcatgtgacagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no057_i16.g1 MSMg01no057_i16.g1 CHROMAT_FILE:
MSMg01no057_i16.g1 PHD_FILE: MSMg01no057_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:31 2005
         (405 letters)



>mm_chr17_22143774_22144578
          Length = 805

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagacctgagcagcacaaaaaatatttttttcatagtcactacatttgtaaatcttctt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagacctgagcagcacaaaaaagatttttttcatagtcactacatttgtaaatcttctt 260

                                                                       
Query: 61  tctggtgttcatcttgtaatggctttcaaagtctggtaaaacacttaccacattctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tctggtgttcatcttgtaatggctttcaaagtctggtaaaacatttaccacattctgtac 320

                                                                       
Query: 121 atttgtatgcatattccccataatggattttgtcatgtactttgagaaatgatttactat 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 atttgtatgcatattccccataatggattttgtcatgtactttcagaaatgatttactat 380

                                                                       
Query: 181 agtttgaacagttatgaggtttctctctaatatgaactctttcatgcatattgaggcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttgaacagttatgaggtttctctctaatatgaactctttcatgcatattgaggcttg 440

                                                                       
Query: 241 agtacatctgtaagcattttccacatttcctgcacttgtgtagtttctttccactatttg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtacatctggaagcattttccacatttcctgcacttgtgtagtttctttccactatttg 500

                                                                       
Query: 301 ttcatttcaacttgagtttgtttagagtcaaaacccttttcacgctctgccttgttgtgt 360
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 501 ttcatttcaacttgagtttgtttagagtcaaaaccctcttcatgctctgccttgttgtgt 560

                                                        
Query: 361 tcgtttttcctatgtggattctttgatttagactactgatggaag 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgtttttcctatgtggattctttgatttagactactgatggaag 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)