BAC Information

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BAC

Clone NameMSMg01-057M22
Chromosome17 (Build37)
Map Location 87,110,274 - 87,110,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043903, Srbd1, LOC545228, Prkce
Downstream geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057M22.T7 (MSMg01no057_m22.b1)MSMg01-057M22.TJ (MSMg01no057_m22.g1)
ACCAG284873AG284874
length686698
length of high quality
(start - end)
572 (37 - 608)519 (73 - 591)
definitionCHROMAT_FILE: MSMg01no057_m22.b1 PHD_FILE: MSMg01no057_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005CHROMAT_FILE: MSMg01no057_m22.g1 PHD_FILE: MSMg01no057_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTAAACGACTCCTATATTCAGAAGAGGCGCGGAATTCTTACTG
TTTTTCGTGCTGAATATTTTTATTAGGAGAACTCTTTAAATTACACTTGA
CCCAGGCTATGACATGGTTCAGTGGAGAAAGTGTACGTGCCACCAAGCCT
AAGTACTTGAATTCAATCCCCAGGACTCAGAGAACTGACGCCTGCTAGCT
GTCTTCTGATTTCCACACACAACATGGAACAGACACCTCCCCCTGCCACA
CACACACACAGGTAATCAGGTTTTTGTTATTGTTTTGGTTTTAGGATTTA
GAGGCAGGGTTTCTCAGGGTATCCCTGGCCGTCCTAGAACTTCTATATCT
TTGTAGTCCAGGCTGGTCTTGAACTCAGGGATCTACTTGCCTCTGCCTCT
GGAATGCCCCCACTACAGCCATGTGCCACCACTGCCTGTCTTAGCTAATC
AGTTAAATCAGTCTTAAAACAGCAGAGAGGTGGTTGTAAGGCATAAATCC
AGTTCCTCTCAGCCCTGGCTGGAATCTTGGGAGTGGCATACGTGCATGTG
AAGAAAGTATCTGGTGGAGGATTAAGCGTGCAACTAATTTGAAAGAGCTC
TTGCCTCGTGTGTAGAAAGTCCTGAGTTTAATCTTCAGCATGGAATAAAC
TGGGTGTGGTATACCCCTGTAATCTCAGTCCTTGGG
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCCATAGGCCAGCCTGGCCTCAAGCT
CAGAGTAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTG
CGCCACCACGCCCGGCATAATGGACATTTTTTTATTGGAACATTCACTTT
AAGGGTTATTTTTTTTATTGTTGTTGTTTTGTTTTTATTTTTCTAGATAG
GGTTTCTCTGTGTAGCCCTGACTGTCCTGGAATTCACTCTGTAGACCAGG
CTGGCCTCGAACTCAGAAATCCGCTTGCCTCTGCCTCCCAAGTGCTGGGA
TAAAAGGCGTGCGCCACCACCGCCTTGCTAAAGGTTATTTATTTGCTGGG
TGTTGGGATGTCAGGCACCCGCATGCTGTGGTACACTTGTGGAAGTCAGA
GGACAACTTGCAGGACCTATTTTTCTCCCTTTACCACATGGGTCCCAAGG
ACCGGACTGGATCTCTAGGATAGGACTCAGATTGTCAGGCTTGGCAAAAT
GTGCCTTCATCTGCTGAGGCCTCCCACAGGCCCTGTTTGCAGCATTCACT
AAAAAAACCATGACTGTGATAATGGCCCATATAGGACTGTACCTCTCCAT
CCCTCCCGAAACTGGTTCCTCGACCCCCACCTTCCAGTATGACTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_m22.b1 MSMg01no057_m22.b1 CHROMAT_FILE:
MSMg01no057_m22.b1 PHD_FILE: MSMg01no057_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:53 2005
         (572 letters)



>mm_chr17_87110065_87111036
          Length = 972

 Score =  897 bits (464), Expect = 0.0
 Identities = 540/574 (94%), Gaps = 20/574 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   aattcttactgtt--tttcgtg-ctgaatatttttattaggagaactctttaaattacac 60
           |||||||||||||  ||  ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 210 aattcttactgttaatt--gtgtctgaatatttttattaggagaactctttaaattacac 267

                                                                       
Query: 61  ttgacccaggctatgacatggttcagtggagaaagtgtacgtgccaccaagcctaagtac 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttgacccaggctatgagatggttcagtggagaaagtgtacgtgccaccaagcctaagtac 327

                                                                       
Query: 121 ttgaattcaatccccaggactcagagaactgacgcctgctagctgtcttctgatttccac 180
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 328 ttgaattcaatccccaggactcagagaattgacacctgctagctgtcttctgatttccac 387

                                                                       
Query: 181 acacaacatggaacagacacctccccctgccacacacacacacaggtaatcaggtttttg 240
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 388 acacaacatggcacagacacctccccct-ccacacacacacacaggtaatcaggtttttg 446

                                                                       
Query: 241 ttattgttttggttttaggatttagaggcagggtttctcagggtatccctggccgtccta 300
           ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 447 ttattgttttggttttaggttttagagacagggtttctctgggtatccctggccgtccta 506

                                                                       
Query: 301 gaacttctatatctttgtagtccaggctggtcttgaactcagggatctacttgcctctgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 507 gaacttctatatctttgtagtccaggctggtcttgaactcagggatctacttgcctctg- 565

                                                                       
Query: 361 ctctggaatgccccc----actacagccatgtgccaccactgcctgtcttagctaatcag 416
                ||||||        | ||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 -----gaatgc----tgggattacagccatgtgccaccactgcctgtcttagataatcag 616

                                                                       
Query: 417 ttaaatcagtcttaaaacagcagagaggtggttgtaaggcataaatccagttcctctcag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttaaatcagtcttaaaacagcagagaggtggttgtaaggcataaatccagttcctctcag 676

                                                                       
Query: 477 ccctggctggaatcttgggagtggcatacgtgcatgtgaagaaagtatctggtggaggat 536
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||
Sbjct: 677 ccctggctggaatcttgggagtggcatacgaacatgtgaagaaagtatctggttgaggat 736

                                             
Query: 537 taagcgtgcaactaatttgaaagagctcttgcct 570
           ||||||||||||||||||| ||||| ||||||||
Sbjct: 737 taagcgtgcaactaatttggaagagttcttgcct 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)