BAC Information

Click to search

BAC

Clone NameMSMg01-059B16
Chromosome17 (Build37)
Map Location 15,236,879 - 15,237,479
singlet/doubletsinglet
Overlap genenone
Upstream gene4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059B16.T7 (MSMg01no059_b16.b1)MSMg01-059B16.TJ (MSMg01no059_b16.g1)
ACCAG285861AG285862
length694809
length of high quality
(start - end)		605 (48 - 652)49 (76 - 124)
definitionCHROMAT_FILE: MSMg01no059_b16.b1 PHD_FILE: MSMg01no059_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:31 2005CHROMAT_FILE: MSMg01no059_b16.g1 PHD_FILE: MSMg01no059_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATATGTTCTACTGAGATGTGTTACTAAACTCAGACTAAGTTTA
AAATGGAAAGAGATTAAGATCAGCAACCAGAATGGATTTAGAGGAGATAA
GCTTTGTTCCCAAGGTGACTCCTACTACTTAGTGTTCCCATCATAGTCTT
TTAAGATTGGTCCGTGTGGCCATTGGACATGGCAGAAAGGGTCTGTTCTG
TTAGGCTATGAACACGTTATGGCTACTCTTTTGCTCTCACACTTGGATCT
CTTGCCAAGCTCCATGTCTGGGAAAAGCCTTCTGACAACATGGCAGTGAG
CTCGCCTGGCAGTGCTTCCTCTGGTCCCTGGCAAGCATTTGATTCTACAG
CCCCTTGAAGCATGTTGGACCAGAACCTATCTGGAAAAGTCTTGGCTTCC
AGAAATTTCATGAGATAATTAATATTTTTTGTTTAAACTATTAAAATCTA
GTTCAATTTGTTACAGAGCAGTGCGTGACTGGTACTCAGTCTTCTTTAGC
TTAGAGCAGAAGACTTCAATGATAATGTGATAATAAATTTGCTGCATACC
TTCAGCTCCCTGATCCTTGTGTCCTGGTATGCAGGGCCATTTGTTTGACC
TGNAGGAAGACTCTACCCATCACCTAAGTGGTGCTATAAAAGAA

NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCAGCGAGATTCCAGCAGCTCTTCATGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGACCCNNNNNNNNNNNNTNNNNNTNNNNN
NNNNNTNNNNNNNNNNNNNTNTNTNTTTTTTTTTTTTNTTTTTTTTTTNT
TNNTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTCTTTTTCCCTCCCCCCC
TTCTCTGCTCTTTTCCTTTCTCCCTCCCGCCCCCTCCTCTTGCTCTCCTC
GCTTGCGTTCTTTCGCGGTTCTTGTGCCGGCTTTTTTTTTTTTTTCTGGC
CCGCGCNCGGGCTTCGTCGCCCTGTAATNNTTCGTTTCCCCCCCCCCCCC
CTGTTTCCTGGCGTCGGTTCCGTCCTTTCCGGTGTGCGTTCTGTCCCCCC
CCTTGGTCCTGCTGCCGCGTTCTCGCGGCCTCTTCGTCCCGTTTTTTCGC
TCTTCTTCCCTCTCCTCTGCCCTGCTTCTCTGCCGTTCGCGCTTTCTGTC
GTCGACGCTTCGTCCTCGGCCTTCCTCGCTTGCTTCTTGTCTTTGGCTCG
ATTTGCGTGTCTGTCTCGTCCCGGTCGCTTCTCTTCGTGTCTTTGCGTCG
TTGCCCACTTCCTCCGTCGCCTGTTTCGCTCGCTCTACTCTCGTCCGTGT
CCGTCTGGTCCCTTCCTCCCCGTACTTCCACGTCTCGTTACGCTCGTCGT
GCCGTTCGGTTTTTCCGTTTATTGTACGTGCTTCGTGTTCTTTGTTGTTT
CTACTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_b16.b1 MSMg01no059_b16.b1 CHROMAT_FILE:
MSMg01no059_b16.b1 PHD_FILE: MSMg01no059_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:31 2005
         (605 letters)



>mm_chr17_15236675_15237679
          Length = 1005

 Score = 1154 bits (597), Expect = 0.0
 Identities = 600/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgttctactgagatgtgttactaaactcagactaagtttaaaatggaaaga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgttctaatgagatgtgttactaaactcagactaagtttaaaatggaaaga 264

                                                                       
Query: 65  gattaagatcagcaaccagaatggatttagaggagataagctttgttcccaaggtgactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gattaagatcagcaaccagaatggatttagaggagataagctttgttcccaaggtgactc 324

                                                                       
Query: 125 ctactacttagtgttcccatcatagtcttttaagattggtccgtgtggccattggacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctactacttagtgttcccatcatagtcttttaagattggtccgtgtggccattggacatg 384

                                                                       
Query: 185 gcagaaagggtctgttctgttaggctatgaacacgttatggctactcttttgctctcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagaaagggtctgttctgttaggctatgaacacgttatggctactcttttgctctcaca 444

                                                                       
Query: 245 cttggatctcttgccaagctccatgtctgggaaaagccttctgacaacatggcagtgagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggatctcttgccaagctccatgtctgggaaaagccttctgacaacatggcagtgagc 504

                                                                       
Query: 305 tcgcctggcagtgcttcctctggtccctggcaagcatttgattctacagccccttgaagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcgcctggcagtgcttcctctggtccctggcaagcatttgattctacagccccttgaagc 564

                                                                       
Query: 365 atgttggaccagaacctatctggaaaagtcttggcttccagaaatttcatgagataatta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgttggaccagaacctatctggaaaagtcttggcttccagaaatttcatgagataatta 624

                                                                       
Query: 425 atattttttgtttaaactattaaaatctagttcaatttgttacagagcagtgcgtgactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atattttttgtttaaactattaaaatctagttcaatttgttacagagcagtgcgtgactg 684

                                                                       
Query: 485 gtactcagtcttctttagcttagagcagaagacttcaatgataatgtgataataaatttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtactcagtcttctttagcttagagcagaagacttcaatgataatgtgataataaatttg 744

                                                                       
Query: 545 ctgcataccttcagctccctgatccttgtgtcctggtatgcagggccatttgtttgacct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgcataccttcagctccctgatccttgtgtcctggtatgcagggccatttgtttgacct 804

            
Query: 605 g 605
           |
Sbjct: 805 g 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |